Research output per year
Research output per year
Description
Introduction
data underlying the publication Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions.
Publication DOI: https://doi.org/10.1107/S2052252524009321
Authors: M. Joosten, J. Greer, J. Parkhurst, T. Burnley, A.J. Jakobi
Description
human complement component C3 synthetic cryo-EM micrographs and atomic structure models. 200000 particles in 800 .mrc micrographs and 2000 .pdb models. Atomic models derived from steered molecular dynamics simulation performed in openMM using starting and target structures from a morphing trajectory between models with PDB id 2a73 and 2i07 respectively.
data underlying the publication Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions.
Publication DOI: https://doi.org/10.1107/S2052252524009321
Authors: M. Joosten, J. Greer, J. Parkhurst, T. Burnley, A.J. Jakobi
Description
human complement component C3 synthetic cryo-EM micrographs and atomic structure models. 200000 particles in 800 .mrc micrographs and 2000 .pdb models. Atomic models derived from steered molecular dynamics simulation performed in openMM using starting and target structures from a morphing trajectory between models with PDB id 2a73 and 2i07 respectively.
Bibliographical note
https://doi.org/10.5281/zenodo.10258256
https://zenodo.org/doi/10.5281/zenodo.4779588
https://openmm.org/
https://doi.org/10.2210/pdb2A73/pdb
https://doi.org/10.2210/pdb2I07/pdb
https://zenodo.org/doi/10.5281/zenodo.4779588
https://openmm.org/
https://doi.org/10.2210/pdb2A73/pdb
https://doi.org/10.2210/pdb2I07/pdb
| Date made available | 14 Oct 2024 |
|---|---|
| Publisher | TU Delft - 4TU.ResearchData |
Datasets
-
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-11021571-all-glueCA
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/b28e84c9-7959-4299-9a69-279b10250257
Dataset/Software: Dataset
-
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-13795965-no-water-movies
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/137d1031-c1ee-40d5-9a36-fd4f4b8af554
Dataset/Software: Dataset
-
Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-11021571-all-glueCA_fractionated
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/fe5e7ef0-b6a5-49a4-a2cd-4ecb53edf83f
Dataset/Software: Dataset
Research output
- 1 Article
-
Roodmus: A toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions
Joosten, M., Greer, J., Parkhurst, J., Burnley, T. & Jakobi, A. J., 2024, In: IUCrJ. 11, Pt 6, p. 951-965 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile23 Downloads (Pure)