Research output per year
Research output per year
Description
Introduction
data underlying the publication Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions.
Publication DOI: https://doi.org/10.1107/S2052252524009321
Authors: M. Joosten, J. Greer, J. Parkhurst, T. Burnley, A.J. Jakobi
Description
SARS-CoV-2 spike glycoprotein synthetic cryo-EM micrographs and atomic structure models. 120000 particles in 400 .mrc micrographs and 16668 .pdb models. The first 8334 atomic models are sampled from the closed state simulation DESRES-Trajectory_sarscov2-11021566. The last 8334 atomic models are sampled from the open state simulation DESRES-Trajectory_sarscov2-11021571. Atomic models derived from molecular dynamics simulation adapted from "Molecular Dynamics Simulations Related to SARS-CoV-2," D. E. Shaw Research Technical Data, 2020.
data underlying the publication Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions.
Publication DOI: https://doi.org/10.1107/S2052252524009321
Authors: M. Joosten, J. Greer, J. Parkhurst, T. Burnley, A.J. Jakobi
Description
SARS-CoV-2 spike glycoprotein synthetic cryo-EM micrographs and atomic structure models. 120000 particles in 400 .mrc micrographs and 16668 .pdb models. The first 8334 atomic models are sampled from the closed state simulation DESRES-Trajectory_sarscov2-11021566. The last 8334 atomic models are sampled from the open state simulation DESRES-Trajectory_sarscov2-11021571. Atomic models derived from molecular dynamics simulation adapted from "Molecular Dynamics Simulations Related to SARS-CoV-2," D. E. Shaw Research Technical Data, 2020.
Bibliographical note
https://www.deshawresearch.com/downloads/download_trajectory_sarscov2.cgi/
https://doi.org/10.5281/zenodo.10258256
https://zenodo.org/doi/10.5281/zenodo.4779588
https://doi.org/10.5281/zenodo.10258256
https://zenodo.org/doi/10.5281/zenodo.4779588
| Date made available | 14 Oct 2024 |
|---|---|
| Publisher | TU Delft - 4TU.ResearchData |
Datasets
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Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-11021571-all-glueCA
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/b28e84c9-7959-4299-9a69-279b10250257
Dataset/Software: Dataset
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Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-13795965-no-water-movies
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/137d1031-c1ee-40d5-9a36-fd4f4b8af554
Dataset/Software: Dataset
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Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_c3c3b
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/2702bc54-def0-4daf-8cd0-7f8e85453616
Dataset/Software: Dataset
Research output
- 1 Article
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Roodmus: A toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions
Joosten, M., Greer, J., Parkhurst, J., Burnley, T. & Jakobi, A. J., 2024, In: IUCrJ. 11, Pt 6, p. 951-965 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
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