Description
Roodmus is a benchmarking tool that allows for the analysis of cryo-EM reconstruction methods using ground truth data. Roodmus uses a molecular dynamics (MD) trajectory as input and samples this trajectory to generate a data set with encoded heterogeneity as defined by the MD.
| Date made available | 28 Apr 2024 |
|---|---|
| Publisher | GitHub/Zenodo |
Software license
- GPLv3
Datasets
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Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-11021571-all-glueCA
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/b28e84c9-7959-4299-9a69-279b10250257
Dataset/Software: Dataset
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Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_DESRES-Trajectory_sarscov2-13795965-no-water-movies
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/137d1031-c1ee-40d5-9a36-fd4f4b8af554
Dataset/Software: Dataset
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Data underlying the publication: Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions - Roodmus_c3c3b
Joosten, M. J. (Creator), Greer, J. (Creator), Parkhurst, J. (Creator), Burnley, T. (Creator) & Jakobi, A. (Creator), TU Delft - 4TU.ResearchData, 14 Oct 2024
DOI: 10.4121/2702bc54-def0-4daf-8cd0-7f8e85453616
Dataset/Software: Dataset