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2020

Accelerated coronary MRI with sRAKI: A database-free self-consistent neural network k-space reconstruction for arbitrary undersampling

Hosseini, S. A. H., Zhang, C., Weingärtner, S., Moeller, S., Stuber, M., Ugurbil, K. & Akçakaya, M., 2020, In : PLoS ONE. 15, 2, 13 p., e0229418.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

An Efficient Method for Multi-Parameter Mapping in Quantitative MRI Using B-Spline Interpolation

Van Valenberg, W., Klein, S., Vos, F. M., Koolstra, K., Van Vliet, L. J. & Poot, D. H. J., 2020, In : IEEE Transactions on Medical Imaging. 39, 5, p. 1681-1689 8908815.

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Anisoplanatic adaptive optics in parallelized laser scanning microscopy

Pozzi, P., Smith, C., Carroll, E., Wilding, D., Soloviev, O., Booth, M., Vdovin, G. & Verhaegen, M., 2020, In : Optics Express. 28, 10, p. 14222-14236

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Automated classification of significant prostate cancer on MRI: A systematic review on the performance of machine learning applications

Castillo, J. M. T., Arif, M., Niessen, W. J., Schoots, I. G. & Veenland, J. F., 2020, In : Cancers. 12, 6, 13 p., 1606.

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Automated detection of cribriform growth patterns in prostate histology images

Ambrosini, P., Hollemans, E., Kweldam, C. F., Leenders, G. J. L. H. V., Stallinga, S. & Vos, F., 2020, In : Scientific Reports. 10, 1, 13 p., 14904.

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Automatic Collateral Scoring from 3D CTA Images

Su, J., Wolff, L., Van Es, A. C. G. M., Van Zwam, W., Majoie, C., Dippel, D. W. J., Van Der Lugt, A., Niessen, W. J. & Van Walsum, T., 2020, In : IEEE Transactions on Medical Imaging. 39, 6, p. 2190-2200 8960439.

Research output: Contribution to journalArticleScientificpeer-review

Cancer-id: Toward identification of cancer by tumor-derived extracellular vesicles in blood

Rikkert, L. G., Beekman, P., Caro, J., Coumans, F. A. W., Enciso-Martinez, A., Jenster, G., Le Gac, S., Lee, W., Loozen, G. B. & More Authors, 2020, In : Frontiers in Oncology. 10, 608.

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Cerebral blood flow and cognitive functioning in patients with disorders along the heart–brain axis: Cerebral blood flow and the heart–brain axis

Heart–Brain Connection consortium & More Authors, 2020, (Accepted/In press) In : Alzheimer's and Dementia: Translational Research and Clinical Interventions.

Research output: Contribution to journalArticleScientificpeer-review

Computational imaging modalities for multi-focal whole-slide imaging systems

Van Der Graaff, L., Van Leenders, G. J. L. H., Boyaval, F. & Stallinga, S., 2020, In : Applied Optics. 59, 20, p. 5967-5982 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Deep learning for assessing the corneal endothelium from specular microscopy images up to 1 year after ultrathin-dsaek surgery

Vigueras-Guillén, J. P., van Rooij, J., Engel, A., Lemij, H. G., van Vliet, L. J. & Vermeer, K. A., 2020, In : Translational Vision Science and Technology. 9, 2, p. 1-12 49.

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Differential diagnosis and mutation stratification of desmoid-type fibromatosis on MRI using radiomics

Timbergen, M. J. M., Starmans, M. P. A., Padmos, G. A., Grünhagen, D. J., van Leenders, G. J. L. H., Hanff, D. F., Niessen, W. J., Klein, S., Visser, J. J. & More Authors, 2020, In : European Journal of Radiology. 131, 9 p., 109266.

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Fast multi-component analysis using a joint sparsity constraint for MR fingerprinting

Nagtegaal, M., Koken, P., Amthor, T. & Doneva, M., 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 521-534 14 p.

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4 Citations (Scopus)
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Genetic correlations and genome-wide associations of cortical structure in general population samples of 22,824 adults

Hofer, E., Roshchupkin, G., Adams, H., Knol, M. J., Lin, H., Li, S., Zare, H., Ahmad, S., Niessen, W. J. & More Authors, 2020, In : Nature Communications. 11, 1, 16 p., 4796.

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Image based aberration retrieval using helical point spread functions

Berlich, R. & Stallinga, S., 2020, In : Applied Optics. 59, 22, p. 6557-6572 16 p.

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Integrating artificial intelligence into the clinical practice of radiology: challenges and recommendations

Recht, M. P., Dewey, M., Dreyer, K., Langlotz, C., Niessen, W., Prainsack, B. & Smith, J. J., 2020, In : European Radiology. 30, 6, p. 3576-3584 9 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Iterative deblending for simultaneous source data using the deep neural network

Zu, S., Cao, J., Qu, S. & Chen, Y., 2020, In : Geophysics. 85, 2, p. V131-V141

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Joint migration inversion: Features and challenges

Sun, Y., Kim, Y. S., Qu, S. & Verschuur, E., 2020, In : Journal of Geophysics and Engineering. 17, 3, p. 525-538

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Localization microscopy at doubled precision with patterned illumination

Cnossen, J., Hinsdale, T., Thorsen, R., Siemons, M., Schueder, F., Jungmann, R., Smith, C. S., Rieger, B. & Stallinga, S., 2020, In : Nature Methods. 17, 1, p. 59-63

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8 Citations (Scopus)
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Longitudinal study of rpe65-associated inherited retinal degenerations

Pierrache, L. H. M., Ghafaryasl, B., Khan, M. I., Yzer, S., van Genderen, M. M., Schuil, J., Boonstra, F. N., Pott, J. W. R., Vermeer, K. A. & More Authors, 2020, In : Retina (Philadelphia, Pa.). 40, 9, p. 1812-1828

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Magnetic resonance fingerprinting for simultaneous renal T1 and T2* mapping in a single breath-hold

Hermann, I., Chacon-Caldera, J., Brumer, I., Rieger, B., Weingärtner, S., Schad, L. R. & Zöllner, F. G., 2020, In : Magnetic Resonance in Medicine. 83, 6, p. 1940-1948 9 p.

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Multi-atlas image registration of clinical data with automated quality assessment using ventricle segmentation

Dubost, F., de Bruijne, M., Nardin, M., Dalca, A. V., Donahue, K. L., Giese, A. K., Etherton, M. R., Wu, O., Niessen, W. & More Authors, 2020, In : Medical Image Analysis. 63, 14 p., 101698.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Multi-scale optical coherence tomography imaging and visualization of Vermeer’s Girl with a Pearl Earring

Dore-Callewaert, T. W. J., Guo, J., Harteveld, G. I., Vandivere, A., Dik, J., Eisemann, E. & Kalkman, J., Aug 2020, In : Optics Express. 28, 18, p. 26239-26256 18 p.

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Myelin water imaging from multi-echo T2 MR relaxometry data using a joint sparsity constraint

Nagtegaal, M., Koken, P., Amthor, T., de Bresser, J., Mädler, B., Vos, F. & Doneva, M., 2020, In : NeuroImage. 219, 11 p., 117014.

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Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging

Li, B., de Groot, M., Steketee, R. M. E., Meijboom, R., Smits, M., Vernooij, M. W., Ikram, M. A., Liu, J., Niessen, W. J. & More Authors, 2020, In : NeuroImage. 218, 13 p., 116993.

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Polarization contrast optical diffraction tomography

van Rooij, J. & Kalkman, J., 2020, In : Biomedical Optics Express. 11, 4, p. 2109-2121

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1 Citation (Scopus)
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Predicting Global Cognitive Decline in the General Population Using the Disease State Index

Cremers, L. G. M., Huizinga, W., Niessen, W. J., Krestin, G. P., Poot, D. H. J., Ikram, M. A., Lötjönen, J., Klein, S. & Vernooij, M. W., 2020, In : Frontiers in Aging Neuroscience. 11, 12 p., 379.

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Sharpness in motion corrected quantitative imaging at 7T

Bazin, P. L., Nijsse, H. E., van der Zwaag, W., Gallichan, D., Alkemade, A., Vos, F. M., Forstmann, B. U. & Caan, M. W. A., 2020, In : NeuroImage. 222, 14 p., 117227.

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Single-crystal copper films on sapphire

Janssen, G. C. A. M., van der Pers, N. M., Hendrikx, R. W. A., Böttger, A. J., Kwakernaak, C., Rieger, B. & Sluiter, M. H. F., 2020, In : Thin Solid Films. 709, 7 p., 138137.

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Spatial versus angular resolution for tractography-assisted planning of deep brain stimulation

Liebrand, L. C., van Wingen, G. A., Vos, F. M., Denys, D. & Caan, M. W. A., 2020, In : NeuroImage: Clinical. 25, 102116.

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Structural disconnectivity and the risk of dementia in the general population

Cremers, L. G. M., Wolters, F. J., de Groot, M., Ikram, M. K., van der Lugt, A., Niessen, W. J., Vernooij, M. W. & Ikram, M. A., 2020, In : Neurology. 95, 11, p. e1528-e1537

Research output: Contribution to journalArticleScientificpeer-review

Teaching a hands-on course during corona lockdown: from problems to opportunities

Hut, R. W., Pols, C. F. J. & Verschuur, D. J., 2020, In : Physics Education. 55, 6, 9 p.

Research output: Contribution to journalArticleProfessional

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Three dimensional particle averaging for structural imaging of macromolecular complexes by localization microscopy

Heydarian, H., Przybylski, A., Schreuder, F., Jungmann, R., Van Werkhoven, B., Keller-Findeisen, J., Ries, J., Stallinga, S., Bates, M. & Rieger, B., 2020, In : bioRxiv.

Research output: Contribution to journalArticleScientific

Towards measuring the effect of flow in blood T-1 assessed in a flow phantom and in vivo

Hermann, I., Uhrig, T., Chacon-Caldera, J., Akcakaya, M., Schad, L. R. & Weingartner, S., 2020, In : Physics in Medicine and Biology. 65, 9, 095001.

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Weakly supervised object detection with 2D and 3D regression neural networks

Dubost, F., Adams, H., Yilmaz, P., Bortsova, G., Tulder, G. V., Ikram, M. A., Niessen, W., Vernooij, M. W. & Bruijne, M. D., Oct 2020, In : Medical Image Analysis. 65, 101767.

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2019

3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI

Dubost, F., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Niessen, W., Vernooij, M., de Bruijne, M. & de Bruijne, M., 2019, In : Medical Image Analysis. 51, p. 89-100

Research output: Contribution to journalArticleScientificpeer-review

10 Citations (Scopus)

A genome-wide association study identifies genetic loci associated with specific lobar brain volumes

van der Lee, S. J., Knol, M. J., Chauhan, G., Satizabal, C. L., Smith, A. V., Hofer, E., Bis, J. C., van den Akker, E. B., Niessen, W. J. & More Authors, 2019, In : Communications Biology. 2, 1, p. 1-9 9 p., 285.

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4 Citations (Scopus)
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A Multichannel Cross-Modal Fusion Framework for Electron Tomography

Guo, Y., Aveyard, R. & Rieger, B., 2019, In : IEEE Transactions on Image Processing. 28, 9, p. 4206-4218 8673880.

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2 Citations (Scopus)
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A pharmacokinetic model including arrival time for two inputs and compensating for varying applied flip-angle in dynamic gadoxetic acid-enhanced MR imaging

Zhang, T., Runge, J. H., Lavini, C., Stoker, J., van Gulik, T., Cieslak, K. P., van Vliet, L. J. & Vos, F. M., 2019, In : PLoS ONE. 14, 8, 20 p., e0220835.

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1 Citation (Scopus)
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Automated versus subjective assessment of spatial and temporal MRI small bowel motility in Crohn's disease

Gollifer, R. M., Menys, A., Plumb, A., Mengoudi, K., Puylaert, C. A. J., Tielbeek, J. A. W., Ponsioen, C. Y., Vos, F. M., Stoker, J., Taylor, S. A. & Atkinson, D., 1 Oct 2019, In : Clinical Radiology. 74, 10, p. 814.e9-814.e19

Research output: Contribution to journalArticleScientificpeer-review

Clinical value of cerebrospinal fluid neurofilament light chain in semantic dementia

Meeter, L. H. H., Steketee, R. M. E., Salkovic, D., Vos, M. E., Grossman, M., McMillan, C. T., Niessen, W. J., Papma, J. M., De Jong, F. J. & More Authors, 2019, In : Journal of Neurology, Neurosurgery and Psychiatry. 90, 9, p. 997-1004 8 p.

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5 Citations (Scopus)
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Comparison between dynamic gadoxetate-enhanced MRI and 99m Tc-mebrofenin hepatobiliary scintigraphy with SPECT for quantitative assessment of liver function

Rassam, F., Zhang, T., Cieslak, K. P., Lavini, C., Stoker, J., Bennink, R. J., van Gulik, T. M., van Vliet, L. J., Runge, J. H. & Vos, F. M., 2019, In : European Radiology. 29, 9, p. 5063-5072

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8 Citations (Scopus)
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Comparison of MRI activity scoring systems and features for the terminal ileum in patients with Crohn disease

Puylaert, C. A. J., Nolthenius, C. J. T., Tielbeek, J. A. W., Makanyanga, J. C., Rodriguez-Justo, M., Brosens, L. A. A., Nio, C. Y., Pendsé, D. A. & Vos, F. M., 2019, In : American Journal of Roentgenology. 212, 2, p. W25-W31

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

Detection of mild cognitive impairment in a community-dwelling population using quantitative, multiparametric MRI-based classification

Bouts, M. J. R. J., van der Grond, J., Vernooij, M. W., Koini, M., Schouten, T. M., de Vos, F., Feis, R. A., Lechner, A., Niessen, W. J. & More Authors, 2019, In : Human Brain Mapping. 40, 9, p. 2711-2722 12 p.

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2 Citations (Scopus)
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Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling

Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2019, In : NeuroImage. 186, p. 518-532

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9 Citations (Scopus)
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Enlarged perivascular spaces in brain MRI: Automated quantification in four regions

Dubost, F., Yilmaz, P., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, In : NeuroImage. 185, p. 534-544

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14 Citations (Scopus)
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Full exploitation of high dimensionality in brain imaging: The JPND working group statement and findings

Adams, H. H. H., Roshchupkin, G. V., DeCarli, C., Franke, B., Grabe, H. J., Habes, M., Jahanshad, N., Medland, S. E., Niessen, W. & More Authors, 2019, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 11, p. 286-290 5 p.

Research output: Contribution to journalArticleScientificpeer-review

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1 Citation (Scopus)
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Fully convolutional architecture vs sliding-window CNN for corneal endothelium cell segmentation

Vigueras Guillén, J. P., Sari, B., Goes, S., Lemij, H. G., van Rooij, J., Vermeer, K. & van Vliet, L., 2019, In : BMC Biomedical Engineering. 1, 4

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Genetic architecture of subcortical brain structures in 38,851 individuals

Satizabal, C. L., Adams, H. H. H., Arfan Ikram, M. & Niessen, W., 2019, In : Nature Genetics. 51, 11, p. 1624-1636

Research output: Contribution to journalArticleScientificpeer-review

Genetic Determinants of Cortical Structure (Thickness, Surface Area and Volumes) among Disease Free Adults in the CHARGE Consortium

Niessen, W., 2019, (Accepted/In press) In : bioRxiv.

Research output: Contribution to journalArticleScientific

Genetic variation underlying cognition and its relation with neurological outcomes and brain imaging

Knol, M. J., Heshmatollah, A., Cremers, L. G. M., Ikram, M. K., Uitterlinden, A. G., van Duijn, C. M., Niessen, W. J., Vernooij, M. W., Ikram, M. A. & Adams, H. H. H., 2019, In : Aging. 11, 5, p. 1440-1456

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