ImPhys/Quantitative Imaging

Research Output

2020

ESMRMB Round Table report on “Can Europe Lead in Machine Learning of MRI-Data?”

Pizzini, F. B., Pesapane, F., Niessen, W., Geerts-Ossevoort, L. & Broeckx, N., 2020, In : Magnetic Resonance Materials in Physics, Biology and Medicine. 33, p. 217-219 3 p.

Research output: Contribution to journalEditorialScientific

3 Citations (Scopus)

Fast multi-component analysis using a joint sparsity constraint for MR fingerprinting

Nagtegaal, M., Koken, P., Amthor, T. & Doneva, M., 2020, In : Magnetic Resonance in Medicine. 83, 2, p. 521-534 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
3 Citations (Scopus)
49 Downloads (Pure)

Localization microscopy at doubled precision with patterned illumination

Cnossen, J., Hinsdale, T., Thorsen, R., Siemons, M., Schueder, F., Jungmann, R., Smith, C. S., Rieger, B. & Stallinga, S., 2020, In : Nature Methods. 17, 1, p. 59-63

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
6 Citations (Scopus)
10 Downloads (Pure)

Magnetic resonance fingerprinting for simultaneous renal T1 and T2* mapping in a single breath-hold

Hermann, I., Chacon-Caldera, J., Brumer, I., Rieger, B., Weingärtner, S., Schad, L. R. & Zöllner, F. G., 2020, In : Magnetic Resonance in Medicine. 83, 6, p. 1940-1948 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
96 Downloads (Pure)

Spatial versus angular resolution for tractography-assisted planning of deep brain stimulation

Liebrand, L. C., van Wingen, G. A., Vos, F. M., Denys, D. & Caan, M. W. A., 2020, In : NeuroImage: Clinical. 25, 102116.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
47 Downloads (Pure)

Three dimensional particle averaging for structural imaging of macromolecular complexes by localization microscopy

Heydarian, H., Przybylski, A., Schreuder, F., Jungmann, R., Van Werkhoven, B., Keller-Findeisen, J., Ries, J., Stallinga, S., Bates, M. & Rieger, B., 2020, In : bioRxiv.

Research output: Contribution to journalArticleScientific

2019

3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI

Dubost, F., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Niessen, W., Vernooij, M., de Bruijne, M. & de Bruijne, M., 2019, In : Medical Image Analysis. 51, p. 89-100

Research output: Contribution to journalArticleScientificpeer-review

10 Citations (Scopus)

A genome-wide association study identifies genetic loci associated with specific lobar brain volumes

van der Lee, S. J., Knol, M. J., Chauhan, G., Satizabal, C. L., Smith, A. V., Hofer, E., Bis, J. C., van den Akker, E. B., Niessen, W. J. & More Authors, 2019, In : Communications Biology. 2, 1, p. 1-9 9 p., 285.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
3 Citations (Scopus)
40 Downloads (Pure)

A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes

Li, B., Niessen, W., Klein, S., de Groot, M., Arfan Ikram, M., Vernooij, M. & Bron, E. E., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D., Liu, T., Peters, T. M., Staib, L. H., Essert, C., Zhou, S., Yap, P-T. & Khan, A. (eds.). Springer, p. 645-653 (Lecture Notes in Computer Science ; vol. 11766).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

A Multichannel Cross-Modal Fusion Framework for Electron Tomography

Guo, Y., Aveyard, R. & Rieger, B., 2019, In : IEEE Transactions on Image Processing. 28, 9, p. 4206-4218 8673880.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2 Citations (Scopus)
56 Downloads (Pure)

A pharmacokinetic model including arrival time for two inputs and compensating for varying applied flip-angle in dynamic gadoxetic acid-enhanced MR imaging

Zhang, T., Runge, J. H., Lavini, C., Stoker, J., van Gulik, T., Cieslak, K. P., van Vliet, L. J. & Vos, F. M., 2019, In : PLoS ONE. 14, 8, 20 p., e0220835.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
70 Downloads (Pure)

Assessing brain structure and function with diffusion-weighted MRI: Application to stroke

Filatova, L., 2019, 146 p.

Research output: ThesisDissertation (TU Delft)

Open Access
File
121 Downloads (Pure)

Autofocus imaging

Hulsken, B. & Stallinga, S., 2019, Patent No. US10365468B2

Research output: Patent

Autofocus imaging

Hulsken, B. & Stallinga, S., 2019, Patent No. US10371929B2

Research output: Patent

Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network

van Wijnen, K. M. H., Dubost, F., Yilmaz, P., Ikram, M. A., Niessen, W., Adams, H., Vernooij, M. W. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D. (ed.). Springer, p. 234-242 (Lecture Notes in Computer Science; vol. 11767).

Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientificpeer-review

Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

Dubost, F., Dünnwald, M., Huff, D., Scheurmann, V., Schreiber, F., Vernooij, M. W., Niessen, W., Skalej, M., Schreiber, S. & More Authors, 2019, Proceedings of 2nd International Workshop on Context-Aware Surgical Theaters,OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging, MLCN 2019. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer, p. 103-111 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Automated versus subjective assessment of spatial and temporal MRI small bowel motility in Crohn's disease

Gollifer, R. M., Menys, A., Plumb, A., Mengoudi, K., Puylaert, C. A. J., Tielbeek, J. A. W., Ponsioen, C. Y., Vos, F. M., Stoker, J., Taylor, S. A. & Atkinson, D., 1 Oct 2019, In : Clinical Radiology. 74, 10, p. 814.e9-814.e19

Research output: Contribution to journalArticleScientificpeer-review

Automatic detection of the region of interest in corneal endothelium images using dense convolutional neural networks

Vigueras-Guillén, J. P., Lemij, H. G., Van Rooij, J., Vermeer, K. A. & Van Vliet, L. J., 2019, Proceeedings of SPIE : Medical Imaging 2019 : Image Processing. Angelini, E. D., Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, Vol. 10949. 12 p. 1094931. (MEDICAL IMAGING 2019: IMAGE PROCESSING).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
File
2 Citations (Scopus)
12 Downloads (Pure)

Clinical value of cerebrospinal fluid neurofilament light chain in semantic dementia

Meeter, L. H. H., Steketee, R. M. E., Salkovic, D., Vos, M. E., Grossman, M., McMillan, C. T., Niessen, W. J., Papma, J. M., De Jong, F. J. & More Authors, 2019, In : Journal of Neurology, Neurosurgery and Psychiatry. 90, 9, p. 997-1004 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
5 Citations (Scopus)
70 Downloads (Pure)

Cognitive functioning in patients with disorders along the heart-brain axis: the role of cerebral blood flow

Leeuwis, A. E., Hooghiemstra, A. M., Bron, E. E., Kuipers, S., Oudeman, E. A., Kalay, T., Brunner-La-Rocco, H-P. H. P., Kappelle, L. J., Niessen, W. & More Authors, 2019, p. 755.

Research output: Contribution to conferenceAbstractScientific

Comparison between dynamic gadoxetate-enhanced MRI and 99m Tc-mebrofenin hepatobiliary scintigraphy with SPECT for quantitative assessment of liver function

Rassam, F., Zhang, T., Cieslak, K. P., Lavini, C., Stoker, J., Bennink, R. J., van Gulik, T. M., van Vliet, L. J., Runge, J. H. & Vos, F. M., 2019, In : European Radiology. 29, 9, p. 5063-5072

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
6 Citations (Scopus)
83 Downloads (Pure)

Comparison of MRI activity scoring systems and features for the terminal ileum in patients with Crohn disease

Puylaert, C. A. J., Nolthenius, C. J. T., Tielbeek, J. A. W., Makanyanga, J. C., Rodriguez-Justo, M., Brosens, L. A. A., Nio, C. Y., Pendsé, D. A. & Vos, F. M., 2019, In : American Journal of Roentgenology. 212, 2, p. W25-W31

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

Computer-Aided Assessment of Longitudinal Fundus Photos for Screening Diabetic Retinopathy

Adal, K., 2019, 111 p.

Research output: ThesisDissertation (TU Delft)

Open Access
File
103 Downloads (Pure)

Confocal Multi-line Scanning Microscope for Efficient 3D Fluorescence Imaging

van der Graaff, L. & Stallinga, S., 2019, Proceedings Applied Industrial Optics : Spectroscopy, Imaging and Metrology 2019. OSA Publishing, 2 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
File
5 Downloads (Pure)

Convolutional neural network-based regression for biomarker estimation in corneal endothelium microscopy images

Vigueras Guillén, J. P., van Rooij, J. G. J., Lemij, H. G., Vermeer, K. & van Vliet, L., 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). Penzel, T. (ed.). Piscataway, NJ, USA: IEEE, p. 876-881

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
File
5 Downloads (Pure)

Detection of mild cognitive impairment in a community-dwelling population using quantitative, multiparametric MRI-based classification

Bouts, M. J. R. J., van der Grond, J., Vernooij, M. W., Koini, M., Schouten, T. M., de Vos, F., Feis, R. A., Lechner, A., Niessen, W. J. & More Authors, 2019, In : Human Brain Mapping. 40, 9, p. 2711-2722 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
2 Citations (Scopus)
80 Downloads (Pure)

Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling

Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2019, In : NeuroImage. 186, p. 518-532

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
9 Citations (Scopus)
92 Downloads (Pure)

Enlarged perivascular spaces in brain MRI: Automated quantification in four regions

Dubost, F., Yilmaz, P., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, In : NeuroImage. 185, p. 534-544

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
14 Citations (Scopus)
101 Downloads (Pure)

Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer, Vol. 11492. p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

1 Citation (Scopus)

Full exploitation of high dimensionality in brain imaging: The JPND working group statement and findings

Adams, H. H. H., Roshchupkin, G. V., DeCarli, C., Franke, B., Grabe, H. J., Habes, M., Jahanshad, N., Medland, S. E., Niessen, W. & More Authors, 2019, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 11, p. 286-290 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
66 Downloads (Pure)

Fully convolutional architecture vs sliding-window CNN for corneal endothelium cell segmentation

Vigueras Guillén, J. P., Sari, B., Goes, S., Lemij, H. G., van Rooij, J., Vermeer, K. & van Vliet, L., 2019, In : BMC Biomedical Engineering. 1, 4

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
28 Downloads (Pure)

Genetic architecture of subcortical brain structures in 38,851 individuals

Satizabal, C. L., Adams, H. H. H., Arfan Ikram, M. & Niessen, W., 2019, In : Nature Genetics. 51, 11, p. 1624-1636

Research output: Contribution to journalArticleScientificpeer-review

Genetic Determinants of Cortical Structure (Thickness, Surface Area and Volumes) among Disease Free Adults in the CHARGE Consortium

Niessen, W., 2019, (Accepted/In press) In : bioRxiv.

Research output: Contribution to journalArticleScientific

Genetic variation underlying cognition and its relation with neurological outcomes and brain imaging

Knol, M. J., Heshmatollah, A., Cremers, L. G. M., Ikram, M. K., Uitterlinden, A. G., van Duijn, C. M., Niessen, W. J., Vernooij, M. W., Ikram, M. A. & Adams, H. H. H., 2019, In : Aging. 11, 5, p. 1440-1456

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
71 Downloads (Pure)

Gray Matter Age Prediction as a Biomarker for Risk of Dementia

Wang, J., Knol, M. J., Tiulpin, A., Dubost, F., de Bruijne, M., Vernooij, M. W., Adams, H. H. H., Ikram, M. A., Niessen, W. J. & Roshchupkin, G. V., 15 Oct 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21213-21218

Research output: Contribution to journalArticleScientificpeer-review

9 Citations (Scopus)

Groupwise multichannel image registration

Guyader, J. M., Huizinga, W., Fortunati, V., Poot, D. H. J., Veenland, J. F., Paulides, M. M., Niessen, W. J. & Klein, S., 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1171-1180 8373696.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

High-Dimensional Mapping of Cognition to the Brain Using Voxel-Based Morphometry and Subcortical Shape Analysis

Zonneveld, H. I., Roshchupkin, G. V., Adams, H. H. H., Gutman, B. A., Van Der Lugt, A., Niessen, W., Vernooij, M. W. & Ikram, M. A., 2019, In : Journal of Alzheimer's Disease. 71, 1, p. 141-152

Research output: Contribution to journalArticleScientificpeer-review

Hydranet: Data augmentation for regression neural networks

Dubost, F., Bortsova, G., Adams, H., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 438-446 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Image analysis methods for dynamic hepatocyte-specific contrast enhanced MRI

Zhang, T., 2019, 125 p.

Research output: ThesisDissertation (TU Delft)

Open Access
File
158 Downloads (Pure)

Implementation of a quantum private query using single-photon transistors

Nagtegaal, M. A. & Blaauboer, M., 2019, In : Journal of Physics B: Atomic, Molecular and Optical Physics. 52, 4, 6 p., 045501.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
80 Downloads (Pure)

Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics

Vilor-Tejedor, N., Ikram, M. A., Roshchupkin, G. V., Cáceres, A., Alemany, S., Vernooij, M. W., Niessen, W. J., van Duijn, C. M., Adams, H. H. & More Authors, 2019, In : NeuroInformatics. 17, 4, p. 583-592 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Integrated photonics interferometric interrogator for a ring-resonator ultrasound sensor

Ouyang, B., Haverdings, M., Horsten, R., Kruidhof, M., Kat, P. & Caro, J., 2019, In : Optics Express. 27, 16, p. 23408-23421

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
81 Downloads (Pure)

Label-free volumetric quantitative imaging of human osteosarcoma cells by hyperspectral coherent anti-Stokes Raman scattering

Karuna, A., Masia, F., Wiltshire, M., Errington, R., Borri, P. & Langbein, W., 2019, Proceedings of SPIE: Multiphoton Microscopy in the Biomedical Sciences XIX. Periasamy, A., So, P. T. C. & Konig, K. (eds.). SPIE, Vol. 10882. 11 p. 108821P. (MULTIPHOTON MICROSCOPY IN THE BIOMEDICAL SCIENCES XIX).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
File
48 Downloads (Pure)

Large scale high sensitivity optical diffraction tomography of zebrafish

van Rooij, J. & Kalkman, J., 2019, Proceedings of SPIE: Advances in Microscopic Imaging II. Beaurepaire, E. & Pavone, F. S. (eds.). SPIE, Vol. 11076. 4 p. 110760U

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Large-scale high-sensitivity optical diffraction tomography of Zebrafish

Van Rooij, J. & Kalkman, J., 2019, In : Biomedical Optics Express. 10, 4, p. 1782-1793 #357859.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
79 Downloads (Pure)

Method and apparatus for optical coherence projection tomography

Kalkman, J. & van der Horst, J., 2019, IPC No. A61B, Priority date 22 Feb 2018, Priority No. NL 2020483

Research output: Patent

Multi-line fluorescence scanning microscope for multi-focal imaging with unlimited field of view

van der Graaff, L., van Leenders, G. J. L. H., Boyaval, F. & Stallinga, S., 2019, In : Biomedical Optics Express. 10, 12, p. 6313-6339

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
13 Downloads (Pure)

Multiple-correlation similarity for block-matching based fast CT to ultrasound registration in liver interventions

Banerjee, J., Sun, Y., Klink, C., Gahrmann, R., Niessen, W. J., Moelker, A. & van Walsum, T., 2019, In : Medical Image Analysis. 53, p. 132-141

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Mutation stratification of desmoid-type fibromatosis using a radiogenomics approach

Timbergen, M., Starmans, M. P. A., Vos, M., Padmos, G. A., Grünhagen, D. J., van Leenders, G. J. L. H., Verhoef, C., Niessen, W., Sleijfer, S. & More Authors, 2019, In : European Journal of Surgical Oncology. 44, 2, p. e16

Research output: Contribution to journalMeeting AbstractScientific

Normative brain volumetry derived from different reference populations: impact on single-subject diagnostic assessment in dementia

Vinke, E. J., Huizinga, W., Bergtholdt, M., Adams, H. H., Steketee, R. M. E., Papma, J. M., De Jong, F. J., Niessen, W. J., Ikram, M. A. & More Authors, 2019, In : Neurobiology of Aging. 84, p. 9-16

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
36 Downloads (Pure)