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  • 2016

    A Comparison of Seed-and-Extend Techniques in Modern DNA Read Alignment Algorithms

    Ahmed, N., Bertels, K. & Al-Ars, Z., Dec 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Tian, T., Jiang, Q., Liu, Y., Burrage, K., Song, J., Wang, Y., Hu, X., Morishita, S., Zhu, Q. & Wang, G. (eds.). Piscataway, NJ: IEEE, p. 1421-1428 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

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    22 Citations (Scopus)
    738 Downloads (Pure)
  • A Heterogeneous Quantum Computer Architecture

    Fu, X., Riesebos, L., Lao, L., García Almudever, C., Sebastiano, F., Versluis, R., Charbon, E. & Bertels, K., 2016, Proceedings of the ACM International Conference on Computing Frontiers, CF '16. New York: Association for Computing Machinery (ACM), p. 323-330 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    38 Citations (Scopus)
  • An Image Processing VLIW Architecture for Real-Time Depth Detection

    Iorga, D., Nane, R., Lu, Y., van Dalen, E. & Bertels, K., 2016, Proceedings - 28th IEEE International Symposium on Computer Architecture and High Performance Computing: SBAC-PAD 2016. Baldassin, A. (ed.). Piscataway: IEEE, p. 158-165 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    4 Citations (Scopus)
  • Balancing High-Performance Parallelization and Accuracy in Canny Edge Detector

    Kritchallo, V., Braithwaite, B., Vermij, E., Bertels, K. & Al-Ars, Z., 2016, Architecture of Computing Systems- ARCS 2016: Proceedings of the 29th International Conference on Architecture of Computing Systems. Hannig, F., Cardoso, J. M. P., Pionteck, T., Fey, D., Schröder-Preikschat, W. & Teich, J. (eds.). Cham: Springer, p. 251-262 12 p. (Lecture Notes in Computer Science; vol. 9367).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    1 Citation (Scopus)
  • Boolean Logic Gate Exploration for Memristor Crossbar

    Xie, L., Du Nguyen, H. A., Taouil, M., Hamdioui, S. & Bertels, K., 2016, Proceedings - 11th IEEE International Conference on Design and Technology of Integrated Systems in Nanoscale Era, DTIS 2016. Danvers, MA: IEEE, p. 1-6 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    13 Citations (Scopus)
  • CIM100x: Computation in-Memory Architecture Based on Resistive Devices

    Hamdioui, S., Taouil, M., Du Nguyen, H. A., Haron, A., Xie, L. & Bertels, K., 2016, Proceedings of CNNA 2016: 15th International Workshop on Cellular Nanoscale and their Applications. Berlin: VDE, p. 95-96 2 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  • CryoCMOS Hardware Technology: A Classical Infrastructure for a Scalable Quantum Computer

    Homulle, H., Visser, S., Patra, B., Ferrari, G., Prati, E., García Almudever, C., Bertels, K., Sebastiano, F. & Charbon, E., 2016, 2016 Proceedings of the ACM International Conference on Computing Frontiers. New York, NY: Association for Computing Machinery (ACM), p. 282-287 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    9 Citations (Scopus)
  • GPU-Accelerated BWA-MEM Genomic Mapping Algorithm Using Adaptive Load Balancing

    Houtgast, E., Sima, V., Bertels, K. & Al-Ars, Z., 2016, Proceedings - 29th International Conference on Architecture of Computing Systems, ARCS 2016. Hannig, F., Cardoso, J. M. P., Pionteck, T., Fey, D., Schröder-Preikschat, W. & Teich, J. (eds.). Springer, p. 130-142 13 p. (Lecture Notes in Computer Science; vol. 9637).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    17 Citations (Scopus)
  • Non-Volatile Look-up Table Based FPGA Implementations

    Xie, L., Du Nguyen, H. A., Taouil, M., Hamdioui, S., Bertels, K. & Alfailakawi, M., 2016, Proceedings : 11th IEEE International Design & Test Symposium. Tourki, R. (ed.). Piscataway, NJ, USA: IEEE, 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    13 Citations (Scopus)
  • Parallel Matrix Multiplication on Memristor-Based Computation-in-Memory Architecture

    Haron, A., Yu, J., Nane, R., Taouil, M., Hamdioui, S. & Bertels, K., 2016, 2016 International Conference on High Performance Computing & Simulation (HPCS): 14th Annual Meeting. Piscataway: IEEE, p. 759-766 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    20 Citations (Scopus)
    399 Downloads (Pure)
  • Power-Efficiency Analysis of Accelerated BWA-MEM Implementations on Heterogeneous Computing Platforms

    Houtgast, E. J., Sima, V-M., Marchiori, G., Bertels, K. & Al-Ars, Z., Dec 2016, 2016 International Conference on ReConFigurable Computing and FPGAs (ReConFig). Athanas, P., Cumplido, R., Feregrino, C. & Sass, R. (eds.). Danvers, MA: IEEE, p. 1-8 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    9 Citations (Scopus)
    109 Downloads (Pure)
  • Skeleton-based design and simulation flow for Computation-in-Memory architectures

    Yu, J., Nane, R., Haron, A., Hamdioui, S., Corporaal, H. & Bertels, K., 2016, 2016 IEEE/ACM International Symposium on Nanoscale Architectures (NANOARCH). Zhao, W. & Moritz, C. A. (eds.). New York: Association for Computing Machinery (ACM), p. 165-170 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    10 Citations (Scopus)
    60 Downloads (Pure)
  • Synthesizing HDL to Memristor Technology: A Generic Framework

    Du Nguyen, H. A., Xie, L., Taouil, M., Hamdioui, S. & Bertels, K., 2016, 2016 IEEE/ACM International Symposium on Nanoscale Architectures (NANOARCH). Zhao, W. & Moritz, C. A. (eds.). New York: Association for Computing Machinery (ACM), p. 43-48 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    11 Citations (Scopus)
  • 2017

    An experimental microarchitecture for a superconducting qantum processor

    Fu, X., Rol, M. A., Bultink, C. C., Van Someren, J., Khammassi, N., Ashraf, I., Vermeulen, R. F. L., De Sterke, J. C., Vlothuizen, W. J., Schouten, R. N., García Almudever, C., DiCarlo, L. & Bertels, K., 14 Oct 2017, MICRO 2017 - 50th Annual IEEE/ACM International Symposium on Microarchitecture Proceedings. IEEE, Vol. Part F131207. p. 813-825 13 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    69 Citations (Scopus)
    142 Downloads (Pure)
  • GPU Accelerated API for Alignment of Genomics Sequencing Data

    Ahmed, N., Mushtaq, H., Bertels, K. & Al-Ars, Z., Nov 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Hu, X., Shyu, C. R., Bromberg, Y., Gao, J., Gong, Y., Korkin, D., Yoo, I. & Zheng, J. H. (eds.). Danvers: IEEE, p. 510-515 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    7 Citations (Scopus)
  • Pauli Frames for Quantum Computer Architectures

    Riesebos, L., Fu, X., Varsamopoulos, S., García Almudever, C. & Bertels, K., 2017, Proceedings of the 54th Annual Design Automation Conference 2017, DAC 2017. Aitken, R. & Li, Z. (eds.). New York: Association for Computing Machinery (ACM), p. 1-6 76

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    14 Citations (Scopus)
  • QX: A high-performance quantum computer simulation platform

    Khammassi, N., Ashraf, I., Fu, X., García Almudever, C. & Bertels, K., 2017, Proceedings of the 2017 Design, Automation & Test in Europe Conference & Exhibition (DATE). IEEE, p. 464-469 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    71 Citations (Scopus)
  • The engineering challenges in quantum computing

    García Almudever, C., Lao, L., Fu, X., Khammassi, N., Ashraf, I., Iorga, D., Varsamopoulos, S., Eichler, C., Wallraff, A., Geck, L., Kruth, A., Knoch, J., Bluhm, H. & Bertels, K., 2017, Proceedings of the 2017 Design, Automation & Test in Europe Conference & Exhibition (DATE). IEEE, p. 836-845

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    63 Citations (Scopus)
  • 2018

    An Efficient GPU-based de Bruijn Graph Construction Algorithm for Micro-Assembly

    Ren, S., Ahmed, N., Bertels, K. & Al-Ars, Z., 2018, Proceedings - 2018 IEEE 18th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2018). Bourbakis, N. G. & Kavraki, D. (eds.). Piscataway, NJ, USA: IEEE, p. 67-72 6 p. 8567459

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    3 Citations (Scopus)
    150 Downloads (Pure)
  • Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM

    Houtgast, E., Sima, V., Bertels, K. & Al-Ars, Z., 2018, 2018 IEEE 18th International Conference on BioInformatics and BioEngineering (BIBE). Bourbakis, N. G. & Kavraki, D. (eds.). Piscataway, NJ. USA: IEEE, p. 243-246 4 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    5 Citations (Scopus)
  • Theoretical and practical aspects of verification of quantum computers

    Naveh, Y., Kashefi, E., Wootton, J. R. & Bertels, K., 2018, Proceedings of the 2018 Design, Automation and Test in Europe Conference and Exhibition, DATE 2018. Piscataway, NJ: IEEE, Vol. 2018-January. p. 721-730 10 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    4 Citations (Scopus)
  • Towards a Scalable Quantum Computer

    Almudever, C. G., Khammassi, N., Hutin, L., Vinet, M., Babaie, M., Sebastiano, F., Charbon, E. & Bertels, K., 2018, Proceedings - 2018 13th IEEE International Conference on Design and Technology of Integrated Systems In Nanoscale Era, DTIS 2018. Piscataway, NJ: IEEE, 1 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    3 Citations (Scopus)
  • 2019

    Diminished-1 Fermat Number Transform for Integer Convolutional Neural Networks

    Baozhou, Z., Ahmed, N., Peltenburg, J., Bertels, K. & Al-Ars, Z., 2019, 2019 IEEE 4th International Conference on Big Data Analytics (ICBDA). Guan, S-U., Zhang, K. & Cao, J. (eds.). Piscataway, NJ, USA: IEEE, p. 47-52 6 p. 8713250

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    2 Citations (Scopus)
  • eQASM: An executable quantum instruction set architecture

    Fu, X., Riesebos, L., Rol, M. A., Van Straten, J., Van Someren, J., Khammassi, N., Ashraf, I., Vermeulen, R. F. L., Newsum, V., Loh, K. K. L., De Sterke, J. C., Vlothuizen, W. J., Schouten, R. N., García Almudever, C., Dicarlo, L. & Bertels, K., 2019, Proceedings - 25th IEEE International Symposium on High Performance Computer Architecture, HPCA 2019. Louri, A. & Venkataramani, G. P. (eds.). Piscataway, NJ: IEEE, p. 224-237 14 p. 8675197. (Proceedings - 25th IEEE International Symposium on High Performance Computer Architecture, HPCA 2019).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    49 Citations (Scopus)
  • Fletcher: A framework to efficiently integrate FPGA accelerators with apache arrow

    Peltenburg, J. W., Van Straten, J., Wijtemans, L., Van Leeuwen, L., Al-Ars, Z. & Hofstee, P., 1 Sept 2019, Proceedings - 29th International Conference on Field-Programmable Logic and Applications, FPL 2019. Sourdis, I., Bouganis, C-S., Alvarez, C., Toledo Diaz, L. A., Valero, P. & Martorell, X. (eds.). Institute of Electrical and Electronics Engineers (IEEE), p. 270-277 8 p. 8892145. (Proceedings - 29th International Conference on Field-Programmable Logic and Applications, FPL 2019).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    15 Citations (Scopus)
    226 Downloads (Pure)
  • Quantum accelerated computer architectures

    Riesebos, L., Fu, X., Moueddenne, A. A., Lao, L., Varsamopoulos, S., Ashraf, I., Van Someren, J., Khammassi, N., Almudever, C. G. & Bertels, K., 2019, 2019 IEEE International Symposium on Circuits and Systems, ISCAS 2019 - Proceedings. Yasuura, H., Miyanaga, Y. & Kiya, H. (eds.). Piscataway, NJ, USA: Institute of Electrical and Electronics Engineers (IEEE), Vol. 2019-May. 4 p. 8702488

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    16 Citations (Scopus)
  • Rebooting Our Computing Models

    Cadareanu, P., Reddy C, N., Almudever, C. G., Khanna, A., Raychowdhury, A., Bertels, K., Narayanan, V., Di Ventra, M. & Gaillardon, P-E., 2019, 2019 Design, Automation & Test in Europe Conference & Exhibition (DATE): Proceedings. IEEE, p. 1469-1476 8 p. 8715167

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    2 Citations (Scopus)
  • 2020

    Cryo-CMOS interfaces for large-scale quantum computers

    Sebastiano, F., Van Dijk, J. P. G., Thart, P. A., Patra, B., Van Staveren, J., Xue, X., Almudever, C. G., Scappucci, G., Veldhorst, M., Vandersypen, L. M. K., Vladimirescu, A., Babaie, M. & Charbon, E., 2020, 2020 IEEE International Electron Devices Meeting, IEDM 2020. Institute of Electrical and Electronics Engineers (IEEE), p. 25.2.1-25.2.4 9372075. (Technical Digest - International Electron Devices Meeting, IEDM; vol. 2020-December).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    5 Citations (Scopus)
    66 Downloads (Pure)
  • Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads

    Ahmed, N., Bertels, K. & Al-Ars, Z., 2020, ICBBB 2020 : Proceedings of 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics. New York: Association for Computing Machinery (ACM), p. 28-34 7 p. (PervasiveHealth: Pervasive Computing Technologies for Healthcare).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    1 Citation (Scopus)
    43 Downloads (Pure)
  • Integration and Evaluation of Quantum Accelerators for Data-Driven User Functions

    Hubregtsen, T., Segler, C., Pichlmeier, J., Sarkar, A., Gabor, T. & Bertels, K., 2020, Proceedings of the 21st International Symposium on Quality Electronic Design, ISQED 2020: Proceedings. IEEE, p. 329-334 6 p. 9137029. (Proceedings - International Symposium on Quality Electronic Design, ISQED; vol. 2020-March).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    1 Citation (Scopus)
  • On Structured Design Space Exploration for Mapping of Quantum Algorithms

    Bandic, M., Zarein, H., Alarcon, E. & Almudever, C. G., 2020, 2020 35th Conference on Design of Circuits and Integrated Systems, DCIS 2020. Lopez-Vallejo, M. & López Barrio, C. (eds.). Institute of Electrical and Electronics Engineers (IEEE), 6 p. 9268670. (2020 35th Conference on Design of Circuits and Integrated Systems, DCIS 2020).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    5 Citations (Scopus)
    126 Downloads (Pure)
  • Quantum Computer Architecture: Towards Full-Stack Quantum Accelerators

    Bertels, K., Sarkar, A., Hubregtsen, T., Serrao, M., Mouedenne, A. A., Yadav, A., Krol, A. & Ashraf, I., 2020, Proceedings of the 2020 Design, Automation and Test in Europe Conference and Exhibition, DATE 2020: Proceedings. Di Natale, G., Bolchini, C. & Vatajelu, E-I. (eds.). IEEE, p. 1-6 6 p. 9116502. (Proceedings of the 2020 Design, Automation and Test in Europe Conference and Exhibition, DATE 2020).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    24 Citations (Scopus)
  • Realizing Quantum Algorithms on Real Quantum Computing Devices

    Almudever, C. G., Lao, L., Wille, R. & Guerreschi, G. G., 2020, 2020 Design, Automation & Test in Europe Conference & Exhibition (DATE): Proceedings. Di Natale, G., Bolchini, C. & Vatajelu, E-I. (eds.). IEEE, p. 864-872 9 p. 9116240

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    14 Citations (Scopus)
    94 Downloads (Pure)
  • Will Quantum Computers Scale without Inter-Chip Comms? A Structured Design Exploration to the Monolithic vs Distributed Architectures Quest

    Rodrigo, S., Abadal, S., Alarcon, E. & Almudever, C. G., 2020, 2020 35th Conference on Design of Circuits and Integrated Systems, DCIS 2020. Lopez-Vallejo, M. & López Barrio, C. (eds.). Institute of Electrical and Electronics Engineers (IEEE), 6 p. 9268630. (2020 35th Conference on Design of Circuits and Integrated Systems, DCIS 2020).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    2 Citations (Scopus)
    77 Downloads (Pure)
  • 2021

    Scaling of multi-core quantum architectures: A communications-aware structured gap analysis

    Rodrigo, S., Bandic, M., Abadal, S., Van Someren, H., Alarcón, E. & Almudéver, C. G., 2021, Proceedings of the 18th ACM International Conference on Computing Frontiers 2021, CF 2021. Association for Computing Machinery (ACM), p. 144-151 (Proceedings of the 18th ACM International Conference on Computing Frontiers 2021, CF 2021).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    3 Citations (Scopus)
  • 2022

    Characterizing the spatio-temporal qubit traffic of a quantum intranet aiming at modular quantum computer architectures

    Rodrigo, S., Spanò, D., Bandic, M., Abadal, S., Van Someren, H., Ovide, A., Feld, S., Almudéver, C. G. & Alarcón, E., 2022, Proceedings of the 9th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2022. Association for Computing Machinery (ACM), 7 p. 8. (Proceedings of the 9th ACM International Conference on Nanoscale Computing and Communication, NANOCOM 2022).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    1 Citation (Scopus)
    17 Downloads (Pure)
  • Full-stack quantum computing systems in the NISQ era: Algorithm-driven and hardware-aware compilation techniques

    Bandic, M., Feld, S. & Almudever, C. G., 2022, Proceedings of the 2022 Design, Automation and Test in Europe Conference and Exhibition, DATE 2022. Bolchini, C., Verbauwhede, I. & Vatajelu, I. (eds.). Piscataway: IEEE, 6 p. 9774643. (Proceedings of the 2022 Design, Automation and Test in Europe Conference and Exhibition, DATE 2022).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    4 Citations (Scopus)
    119 Downloads (Pure)
  • 2023

    Mapping quantum algorithms to multi-core quantum computing architectures

    Ovide, A., Rodrigo, S., Bandic, M., Van Someren, H., Feld, S., Abadal, S., Alarcon, E. & Almudever, C. G., 2023, ISCAS 2023 - 56th IEEE International Symposium on Circuits and Systems, Proceedings. Institute of Electrical and Electronics Engineers (IEEE), 5 p. (Proceedings - IEEE International Symposium on Circuits and Systems; vol. 2023-May).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    3 Citations (Scopus)
    15 Downloads (Pure)
  • Mapping Quantum Circuits to Modular Architectures with QUBO

    Bandic, M., Prielinger, L., Nublein, J., Ovide, A., Rodrigo, S., Van Someren, H., Vardoyan, G., Almudever, C. G., Feld, S. & More Authors, 2023, Proceedings - 2023 IEEE International Conference on Quantum Computing and Engineering, QCE 2023. Muller, H., Alexev, Y., Delgado, A. & Byrd, G. (eds.). Institute of Electrical and Electronics Engineers (IEEE), p. 790-801 12 p. (Proceedings - 2023 IEEE International Conference on Quantum Computing and Engineering, QCE 2023; vol. 1).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  • QKSA: Quantum Knowledge Seeking Agent

    Sarkar, A., Al-Ars, Z. & Bertels, K., 2023, Artificial General Intelligence - 15th International Conference, AGI 2022, Proceedings. Goertzel, B., Iklé, M., Potapov, A. & Ponomaryov, D. (eds.). Springer, p. 384-393 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13539 LNAI).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    1 Citation (Scopus)
    30 Downloads (Pure)