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Research Output

  • 29 Article
  • 12 Conference contribution
  • 1 Abstract
  • 1 Conference article
2020

An Efficient Method for Multi-Parameter Mapping in Quantitative MRI Using B-Spline Interpolation

Van Valenberg, W., Klein, S., Vos, F. M., Koolstra, K., Van Vliet, L. J. & Poot, D. H. J., 2020, In : IEEE Transactions on Medical Imaging. 39, 5, p. 1681-1689 8908815.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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3 Downloads (Pure)

Predicting Global Cognitive Decline in the General Population Using the Disease State Index

Cremers, L. G. M., Huizinga, W., Niessen, W. J., Krestin, G. P., Poot, D. H. J., Ikram, M. A., Lötjönen, J., Klein, S. & Vernooij, M. W., 2020, In : Frontiers in Aging Neuroscience. 11, 12 p., 379.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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24 Downloads (Pure)
2019

Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions

Arkesteijn, J., Poot, D., Ikram, M. A., Niessen, W., van Vliet, L., Vernooij, M. W. & Vos, F., 2019, In : IEEE Transactions on Medical Imaging. 39, 2, p. 308-319

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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19 Downloads (Pure)
2018

A spatio-temporal reference model of the aging brain

huizinga, W., Poot, D., Vernooij, M. W., Roshchupkin, G. V., bron, E. E., Ikram, M. A., Rueckert, D., Niessen, W. & Klein, S., 2018, In : NeuroImage. 169, p. 11-22

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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14 Citations (Scopus)
5 Downloads (Pure)

Blood perfusion of patellar bone measured by dynamic contrast-enhanced MRI in patients with patellofemoral pain: A case–control study

van der Heijden, R. A., Poot, D. H. J., Ekinci, M., Kotek, G., van Veldhoven, P. L. J., Klein, S., Verhaar, J. A. N., Krestin, G. P., Bierma-Zeinstra, S. M. A., van Middelkoop, M. & Oei, E. H. G., 2018, In : Journal of Magnetic Resonance Imaging. 48, 5, p. 1344-1350

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Citations (Scopus)
20 Downloads (Pure)

Dynamic contrast-enhanced MRI of the patellar bone: How to quantify perfusion

Poot, D. H. J., van der Heijden, R. A., van Middelkoop, M., Oei, E. H. G. & Klein, S., 2018, In : Journal of Magnetic Resonance Imaging. 47, 3, p. 848-858 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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7 Citations (Scopus)
17 Downloads (Pure)

Groupwise image registration based on a total correlation dissimilarity measure for quantitative MRI and dynamic imaging data

Guyader, J. M., Huizinga, W., Poot, D. H. J., van Kranenburg, M., Uitterdijk, A., Niessen, W. J. & Klein, S., 2018, In : Scientific Reports. 8, 1, 14 p., 13112.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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5 Citations (Scopus)
13 Downloads (Pure)
2017

Classification of hemodynamically significant stenoses from dynamic CT perfusion and CTA myocardial territories

Giordano, M., Poot, D., Coenen, A., van Walsum, T., Tezza, M., Nieman, K. & Niessen, W., 22 Mar 2017, In : Medical Physics. 44, 4, p. 1347-1358 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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27 Downloads (Pure)

CSF contamination-invariant statistics in conventional diffusion-weighted MRI of the fornix

Arkesteijn, J., Poot, D., de Groot, M., Ikram, M. A., Niessen, W., van Vliet, L., Vernooij, MW. & Vos, F., 30 Aug 2017, In : Biomedical Physics & Engineering Express. 3, p. 1-14 065003.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model

Arkesteijn, G. A. M., Poot, D. H. J., Niestijl, M., Vernooij, M. W., Niessen, W. J., Van Vliet, L. J. & Vos, F. M., 15 Jun 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 783-786 4 p. 7950635

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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15 Downloads (Pure)

Stochastic optimization with randomized smoothing for image registration

Sun, W., Poot, D. H. J., Smal, I., Yang, X., Niessen, W. J. & Klein, S., 2017, In : Medical Image Analysis. 35, p. 146-158 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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7 Citations (Scopus)
28 Downloads (Pure)

Super-resolution T1 estimation: Quantitative high resolution T1 mapping from a set of low resolution T1-weighted images with different slice orientations

Van Steenkiste, G., Poot, D. H. J., Jeurissen, B., den Dekker, A. J., Vanhevel, F., Parizel, P. M. & Sijbers, J., 2017, In : Magnetic Resonance in Medicine. 77, 5, p. 1818-1830

Research output: Contribution to journalArticleScientificpeer-review

7 Citations (Scopus)
2016

Modeling the brain morphology distribution in the general aging population

Huizinga, W., Poot, D. H. J., Roshchupkin, G., Bron, E. E., Ikram, M. A., Vernooij, M. W., Rueckert, D., Niessen, W. J. & Klein, S., 2016, Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging. Gimi, B. & Krol, A. (eds.). SPIE, Vol. 9788. p. 1-7 97880I. (Proceedings of SPIE; vol. 9788).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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3 Citations (Scopus)
57 Downloads (Pure)

PCA-based groupwise image registration for quantitative MRI

Huizinga, W., Poot, DHJ., Guyader, JM., Klaassen, R., Coolen, BF., van Kranenburg, M., van Geuns, RJM., Uitterdijk, A., Polfliet, M., Vandermeulebroucke, J., Leemans, A., Niessen, WJ. & Klein, S., 2016, In : Medical Image Analysis. 29, p. 65-78 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
66 Citations (Scopus)

Reliable Dual Tensor Model Estimation in Single and Crossing Fibers Based on Jeffreys Prior

Yang, J., Poot, D. HJ., Caan, M. WA., Su, T., Majoie, C. BLM., van Vliet, L. J. & Vos, F. M., 2016, In : PLoS ONE. 11, 10, 24 p., e0164336.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Citations (Scopus)
131 Downloads (Pure)

Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations

Van Steenkiste, G., Jeurissen, B., Veraart, J., den Dekker, AJ., Parizel, PM., Poot, DHJ. & Sijbers, J., 2016, In : Magnetic Resonance in Medicine. 75, 1, p. 181-195

Research output: Contribution to journalArticleScientificpeer-review

Open Access
27 Citations (Scopus)

Three-dimensional quantitative T1 and T2 mapping of the carotid artery: Sequence design and in vivo feasibility

Coolen, BF., Poot, DHJ., Liem, MI., Smits, LP., Gao, S., Kotek, G., Klein, S. & Nederveen, AJ., 2016, In : Magnetic Resonance in Medicine. 75, 3, p. 1008-1017 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
24 Citations (Scopus)

Total Correlation-Based Groupwise Image Registration for Quantitative MRI

Guyader, J. M., Huizinga, W., Fortunati, V., Poot, D. H., Kranenburg, M. V., Veenland, J. F., Paulides, M. M., Niessen, W. J. & Klein, S., 16 Dec 2016, Proceedings - 29th IEEE Conference on Computer Vision and Pattern Recognition Workshops, CVPRW 2016. IEEE, p. 626-633 8 p. 7789574

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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4 Citations (Scopus)
22 Downloads (Pure)
2015

CSF contamination-invariant statistics in diffusion-weighted MRI

Arkesteijn, GAM., Poot, DHJ., de Groot, M., Vernooij, MW., Niessen, WJ., van Vliet, LJ. & Vos, FM., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway: IEEE Society, p. 454-457 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
3 Citations (Scopus)

Detecting statistically significant differences in quantitative MRI experiments, applied to diffusion tensor imaging

Poot, DHJ. & Klein, S., 2015, In : IEEE Transactions on Medical Imaging. 34, 5, p. 1164-1176 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
17 Citations (Scopus)

Estimating diffusion properties in complex fiber configurations based on structure-adaptive multi-valued tensor-field filtering

Yang, J., Poot, DHJ., Arkesteijn, GAM., Caan, MWA., van Vliet, LJ. & Vos, FM., 2015, Medical Imaging 2015: Image Processing. Ourselin, S. & Styner, MA. (eds.). Bellingham, WA, USA: SPIE, p. 1-7 7 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 9413).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access

Estimation of diffusion properties in three-way fiber crossings without overfitting

Yang, J., Poot, DHJ., van Vliet, LJ. & Vos, FM., 2015, In : Physics in Medicine and Biology. 60, 23, p. 9123-9144 22 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

High resolution T1 estimation from multiple low resolution magnetic resonance images

Van Steenkiste, G., Poot, DHJ., Jeurissen, B., den Dekker, AJ. & Sijbers, J., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway: IEEE Society, p. 1036-1039 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access

Influence of image registration on apparent diffusion coefficient images computed from free-breathing diffusion MR images of the abdomen

Guyader, J-M., Bernardin, L., Douglas, NHM., Poot, DHJ., Niessen, WJ. & Klein, S., 2015, In : Journal of Magnetic Resonance Imaging. 42, 2, p. 315-330 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
26 Citations (Scopus)

Rank-2 model-order selection in diffusion tensor MRI: Infromation complexity based on the total Kullback-Leibler divergence

Yang, J., Poot, DHJ., Caan, MWA., Vos, FM. & van Vliet, LJ., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway, NJ, USA: IEEE Society, p. 926-929 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
1 Citation (Scopus)
2014

Fast multidimensional B-spline interpolation using template metaprogramming

Huizinga, W., Klein, S. & Poot, DHJ., 2014, In : Lecture Notes in Computer Science. 8545, p. 11-20 10 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

Guyader, J-M., Bernardin, L., Douglas, NHM., Poot, DHJ., Niessen, WJ. & Klein, S., 2014, In : Progress in Biomedical Optics and Imaging. 9034, p. 1-16 16 p.

Research output: Contribution to journalConference articleScientificpeer-review

2 Citations (Scopus)

Influence of image registration on apparent diffusion coefficient images computed from fee-breathing diffusion MR images of the abdomen

Guyader, J-M., Bernardin, L., Douglas, NHM., Poot, DHJ., Niessen, WJ. & Klein, S., 2014, In : Journal of Magnetic Resonance. p. 1-16 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Interactive local super-resolution reconstruction of whole-body MRI mouse data: A pilot study with applications to bone and kidney metastases

Dzyubachyk, O., Khmelinskii, A., Plenge, E., Kok, P., Snoeks, TJA., Poot, DHJ., Lowik, CWGM., Botha, CP., Niessen, WJ., van der Weerd, L., Meijering, E. & Lelieveldt, BPF., 2014, In : PLoS ONE. 9, 9, p. 1-10 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
3 Citations (Scopus)

Non-rigid groupwise image registration for motion compensation in quantitative MRI

Huizinga, W., Poot, DHJ., Guyader, J-M., Niessen, WJ. & et al, ., 2014, In : Lecture Notes in Computer Science. 8545, p. 184-193 10 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Three-dimensional inversion recovery manganese-enhanced MRI of mouse brain using super-resolution reconstruction to visualize nuclei involved in higher brain function

Plenge, E., Poole, DS., Poot, DHJ., Lakke, EAJF., Niessen, WJ., Meijering, E. & van der Weerd, L., 2014, In : NMR in Biomedicine. 27, p. 749-759 11 p.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)
2013

Image registration improves human knee cartilage T1 mapping with delayed gadolinium-enhanced MRI of cartilage (dGEMRIC)

Bron, EE., Tiel, J., Smit, H., Poot, DHJ., Niessen, WJ., Krestin, GP., Weinans, HH., Oei, E., Kotek, G. & Klein, S., 2013, In : European Radiology. 23, 1, p. 246-252 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
34 Citations (Scopus)
2010

Adaptive noise filtering for accurate and precise diffusion estimation in fiber crossings

Caan, MWA., Khedoe, HG., Poot, DHJ., den Dekker, AJ., Olabarriaga, SD., Grimbergen, KA., van Vliet, LJ. & Vos, FM., 2010, Proceedings of 13th International Conference on Medical Image Computing and Computer-Assisted Intervention. Hutchison, D. (ed.). Beijing, China: MICCAI, p. 167-174 8 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

26 Citations (Scopus)

Adaptive noise filtering for accurate and precise diffusion estimation in fiber crossings

Caan, MWA., Khedoe, HG., Poot, DHJ., den Dekker, AJ., van Vliet, LJ. & Vos, FM., 2010, In : Lecture Notes in Computer Science. 6361, p. 167-174 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Estimation of diffusion properties in crossing fiber bundles

Caan, MWA., Khedoe, HG., Poot, DHJ., den Dekker, AJ., Olabarriaga, SD., Grimbergen, KA., van Vliet, LJ. & Vos, FM., 2010, In : IEEE Transactions on Medical Imaging. 29, 8, p. 1504-1515 12 p.

Research output: Contribution to journalArticleScientificpeer-review

29 Citations (Scopus)

Optimal experimental design for diffusion kurtosis imaging

Poot, DHJ., den Dekker, AJ., Achten, E., Verhoye, M. & Sijbers, JJM., 2010, In : IEEE Transactions on Medical Imaging. 29, 3, p. 819-829 11 p.

Research output: Contribution to journalArticleScientificpeer-review

133 Citations (Scopus)
2009

Likelihood based hyphothesis tests for brain activation detection from MRI data disturbed by colored noise: a simulation study

den Dekker, AJ., Poot, DHJ., Bos, R. & Sijbers, JJM., 2009, In : IEEE Transactions on Medical Imaging. 28, 2, p. 287-296 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Likelihood-based hypothesis tests for brain activation detection from MRI data disturbed by colored noise: A simulation study

den Dekker, AJ., Poot, DHJ., Bos, R. & Sijbers, JJM., 2009, In : IEEE Transactions on Medical Imaging. 28, 2, p. 287-296 10 p.

Research output: Contribution to journalArticleScientificpeer-review

11 Citations (Scopus)
2008

An exploration of spatial similarities in temporal noise spectra in fMRI measurements

Poot, DHJ., Sijbers, JJM. & den Dekker, AJ., 2008, Proceedings of SPIE 6914, art. no. 69142F. Reinhardt, J.M., PJ. P. W. (ed.). San Diego, Californie, USA: SPIE, p. 1-8 8 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientific

Optimizing the diffusion kurtosis imaging acquisition

Poot, DHJ., Sijbers, JJM. & den Dekker, AJ., 2008, p. 317-318. 2 p.

Research output: Contribution to conferenceAbstractScientific

2006

Automatic Estimation of the noise variance from the histogram of a magnetic resonance image

Poot, DHJ., Sijbers, JJM., den Dekker, AJ. & Pintjens, W., 2006, Proceedings on the Belgian Day on Biomedical Engineering IEEE/EMBS Benelux Symposium. Vanpoucke, F. (ed.). Brussels: IEEE Society, p. 135-138 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Estimation of the noise variance from the background histogram mode of an Magnetic Resonance Image

Poot, DHJ., Sijbers, JJM., den Dekker, AJ. & Bos, R., 2006, Proceedings of SPS-Darts 2006, the second annual IEEE Benelux?DSP Valley Symposium. Philips,W. (ed.). Metropolis, Antwerp, Belgium: SPS-Darts, p. 159-162 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Robust estimation of the noise variance from background MR data progress in biomedical optics and imaging

Sijbers, JJM., den Dekker, AJ., Poot, DHJ., Bos, R., Verhoye, M. & van der Linden, AC., 2006, Proceedings of SPIE 6144 III, art no. 61446B. Reinhardt,J.M., PJ. P. (ed.). San Diego, California, USA: SPIE, p. 2018-2028 11 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review