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Research Output

2020

An Efficient Method for Multi-Parameter Mapping in Quantitative MRI Using B-Spline Interpolation

Van Valenberg, W., Klein, S., Vos, F. M., Koolstra, K., Van Vliet, L. J. & Poot, D. H. J., 2020, In : IEEE Transactions on Medical Imaging. 39, 5, p. 1681-1689 8908815.

Research output: Contribution to journalArticleScientificpeer-review

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3 Downloads (Pure)

Automated detection of cribriform growth patterns in prostate histology images

Ambrosini, P., Hollemans, E., Kweldam, C. F., Leenders, G. J. L. H. V., Stallinga, S. & Vos, F., 2020, In : Scientific Reports. 10, 1, 13 p., 14904.

Research output: Contribution to journalArticleScientificpeer-review

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Detection of small cerebral lesions using multi-component MR Fingerprinting with local joint sparsity

Nagtegaal, M. A., Hermann, I., Weingärtner, S. D., de Bresser, J. & Vos, F. M., 9 Aug 2020.

Research output: Contribution to conferenceAbstractScientific

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Myelin water imaging from multi-echo T2 MR relaxometry data using a joint sparsity constraint

Nagtegaal, M., Koken, P., Amthor, T., de Bresser, J., Mädler, B., Vos, F. & Doneva, M., 2020, In : NeuroImage. 219, 11 p., 117014.

Research output: Contribution to journalArticleScientificpeer-review

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7 Downloads (Pure)

Sharpness in motion corrected quantitative imaging at 7T

Bazin, P. L., Nijsse, H. E., van der Zwaag, W., Gallichan, D., Alkemade, A., Vos, F. M., Forstmann, B. U. & Caan, M. W. A., 2020, In : NeuroImage. 222, 14 p., 117227.

Research output: Contribution to journalArticleScientificpeer-review

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1 Downloads (Pure)

Spatial versus angular resolution for tractography-assisted planning of deep brain stimulation

Liebrand, L. C., van Wingen, G. A., Vos, F. M., Denys, D. & Caan, M. W. A., 2020, In : NeuroImage: Clinical. 25, 102116.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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1 Citation (Scopus)
47 Downloads (Pure)
2019

A pharmacokinetic model including arrival time for two inputs and compensating for varying applied flip-angle in dynamic gadoxetic acid-enhanced MR imaging

Zhang, T., Runge, J. H., Lavini, C., Stoker, J., van Gulik, T., Cieslak, K. P., van Vliet, L. J. & Vos, F. M., 2019, In : PLoS ONE. 14, 8, 20 p., e0220835.

Research output: Contribution to journalArticleScientificpeer-review

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70 Downloads (Pure)

Automated versus subjective assessment of spatial and temporal MRI small bowel motility in Crohn's disease

Gollifer, R. M., Menys, A., Plumb, A., Mengoudi, K., Puylaert, C. A. J., Tielbeek, J. A. W., Ponsioen, C. Y., Vos, F. M., Stoker, J., Taylor, S. A. & Atkinson, D., 1 Oct 2019, In : Clinical Radiology. 74, 10, p. 814.e9-814.e19

Research output: Contribution to journalArticleScientificpeer-review

Comparison between dynamic gadoxetate-enhanced MRI and 99m Tc-mebrofenin hepatobiliary scintigraphy with SPECT for quantitative assessment of liver function

Rassam, F., Zhang, T., Cieslak, K. P., Lavini, C., Stoker, J., Bennink, R. J., van Gulik, T. M., van Vliet, L. J., Runge, J. H. & Vos, F. M., 2019, In : European Radiology. 29, 9, p. 5063-5072

Research output: Contribution to journalArticleScientificpeer-review

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6 Citations (Scopus)
83 Downloads (Pure)

Comparison of MRI activity scoring systems and features for the terminal ileum in patients with Crohn disease

Puylaert, C. A. J., Nolthenius, C. J. T., Tielbeek, J. A. W., Makanyanga, J. C., Rodriguez-Justo, M., Brosens, L. A. A., Nio, C. Y., Pendsé, D. A. & Vos, F. M., 2019, In : American Journal of Roentgenology. 212, 2, p. W25-W31

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

OC-0567 Reconstructing the 3-D proton dose distribution from the modelled iono-acoustic wave field

Lens, E., de Blécourt, A., Schaart, D., Vos, F. & van Dongen, K., 2019, In : Radiotherapy & Oncology. 133, suppl.1

Research output: Contribution to journalMeeting AbstractScientific

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12 Downloads (Pure)

Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions

Arkesteijn, J., Poot, D., Ikram, M. A., Niessen, W., van Vliet, L., Vernooij, M. W. & Vos, F., 2019, In : IEEE Transactions on Medical Imaging. 39, 2, p. 308-319

Research output: Contribution to journalArticleScientificpeer-review

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Reconstructing 3D proton dose distribution using ionoacoustics

van Dongen, K., de Blécourt, A., Lens, E., Schaart, D. & Vos, F., 2019, In : Physics in Medicine and Biology. 64, 22, 1 p., 225005.

Research output: Contribution to journalArticleScientificpeer-review

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37 Downloads (Pure)

White matter by diffusion MRI following methylphenidate treatment: A randomized control trial in males with attention-deficit/hyperactivity disorder

Bouziane, C., Filatova, O. G., Schrantee, A., Caan, M. W. A., Vos, F. M. & Reneman, L., 2019, In : Radiology. 293, 1, p. 186-192

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Citations (Scopus)
7 Downloads (Pure)
2018
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19 Downloads (Pure)

A hybrid segmentation method for partitioning the liver based on 4D DCE-MR images

Zhang, T., Wu, Z., Runge, J. H., Lavini, C., Stoker, J., Van Gulik, T., Cieslak, K. P., Van Vliet, L. J. & Vos, F. M., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 1057434

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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32 Downloads (Pure)

Comparison of contrast-enhanced and diffusion-weighted MRI in assessment of the terminal ileum in Crohn’s disease patients

Puylaert, C. A. J., Tielbeek, J. A. W., Schüffler, P. J., Nio, C. Y., Horsthuis, K., Mearadji, B., Ponsioen, C. Y., Vos, F. M. & Stoker, J., 2018, In : Abdominal Radiology. 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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27 Downloads (Pure)

Comparison of multi-tensor diffusion models' performance for white matter integrity estimation in chronic stroke

Filatova, L., van Vliet, L. J., Schouten, A. C., Kwakkel, G., van der Helm, F. C. T., Vos, F. M. & More Authors, 2018, In : Frontiers in Neuroscience. 12, 12 p., 247.

Research output: Contribution to journalArticleScientificpeer-review

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1 Citation (Scopus)
19 Downloads (Pure)

Estimating the arterial input function from dynamic contrast-enhanced MRI data with compensation for flow enhancement (II): Applications in spine diagnostics and assessment of crohn's disease

van Schie, J. J. N., Lavini, C., van Vliet, L. J., Kramer, G., Pieters - van den Bos, I., Marcus, J. T., Stoker, J. & Vos, F. M., 2018, In : Journal of Magnetic Resonance Imaging. 47, 5, p. 1197-1204 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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3 Citations (Scopus)
16 Downloads (Pure)

Modelling the Iono-Acoustic Wave Field for Proton Beam Range Verification

van Dongen, K., de Blécourt, A., Lens, E., Schaart, D. & Vos, F., 2018, 2018 IEEE International Ultrasonics Symposium (IUS). IEEE, 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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1 Citation (Scopus)
16 Downloads (Pure)

Quantified Terminal Ileal Motility during MR Enterography as a Biomarker of Crohn Disease Activity: Prospective Multi-Institution Study

Menys, A., Puylaert, C., Tutein Nolthenius, C. E., Plumb, A. E., Makanyanga, J., Tielbeek, J., Pendse, D., Brosens, L. A., Vos, F. & More Authors, 2018, In : Radiology. 289, 2, p. 428-435

Research output: Contribution to journalArticleScientificpeer-review

10 Citations (Scopus)

Relationship between MRI quantified small bowel motility and abdominal symptoms in Crohn's disease patients-a validation study

Gollifer, R. M., Menys, A., Makanyanga, J., Puylaert, C. A. J., Vos, F. M., Stoker, J., Atkinson, D. & Taylor, S. A., 2018, In : British Journal of Radiology. 91, 1089, 7 p.

Research output: Contribution to journalArticleScientificpeer-review

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6 Citations (Scopus)
16 Downloads (Pure)

Semiautomatic Assessment of the Terminal Ileum and Colon in Patients with Crohn Disease Using MRI (the VIGOR++ Project)

Puylaert, C. A. J., Schüffler, P. J., Naziroglu, R. E., Tielbeek, J. A. W., Li, Z., Makanyanga, J. C., Tutein Nolthenius, C. J., Nio, C. Y., Pendsé, D. A., Menys, A., Ponsioen, C. Y., Atkinson, D., Forbes, A., Buhmann, J. M., Fuchs, T. J., Hatzakis, H., van Vliet, L. J., Stoker, J., Taylor, S. A. & Vos, F. M., 2018, In : Academic Radiology. 8 p.

Research output: Contribution to journalArticleScientificpeer-review

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9 Citations (Scopus)
23 Downloads (Pure)

Three-dimensional registration of freehand-tracked ultrasound to CT Images of the Talocrural Joint

Tümer, N., Kok, A., Vos, F., Streekstra, G. J., Askeland, C., Tuijthof, G. & Zadpoor, A., 2018, In : Sensors. 18, 7, 16 p., 2375.

Research output: Contribution to journalArticleScientificpeer-review

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3 Citations (Scopus)
31 Downloads (Pure)
2017

Analysis of Motility in Apparently Normal Small Bowel–Relationship to Crohn’s Symptoms

Gollifer, R., Menys, A., Makanyanga, J., Puylaert, C., Vos, F., Stoker, J., Atkinson, D. & Taylor, S. A., 7 Apr 2017, Proceedings of the ISMRM Annual Meeting & Exhibition 2017. ISMRM, p. 4967-4967

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

CSF contamination-invariant statistics in conventional diffusion-weighted MRI of the fornix

Arkesteijn, J., Poot, D., de Groot, M., Ikram, M. A., Niessen, W., van Vliet, L., Vernooij, MW. & Vos, F., 30 Aug 2017, In : Biomedical Physics & Engineering Express. 3, p. 1-14 065003.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Estimating the arterial input function from dynamic contrast-enhanced MRI data with compensation for flow enhancement (I): Theory, method, and phantom experiments

van Schie, J., Lavini, C., van Vliet, L. & Vos, F., 2017, In : Journal of Magnetic Resonance Imaging. 47, 5, p. 1190-1196 7 p.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Heritability of connectivity and disconnectivity of the brain in a population-based study

Langen, C. D., Roshchupkin, G., Adams, H. H., De Groot, M., Vos, F., Vernooij, M. W., Ikram, M. A. & Niessen, W. J., 15 Jun 2017, Proceedings of IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 349-353 5 p. 7950535

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model

Arkesteijn, G. A. M., Poot, D. H. J., Niestijl, M., Vernooij, M. W., Niessen, W. J., Van Vliet, L. J. & Vos, F. M., 15 Jun 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 783-786 4 p. 7950635

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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15 Downloads (Pure)

Semi-automatic bowel wall thickness measurements on MR enterography in patients with Crohn's disease

Naziroglu, R. E., Puylaert, C. A. J., Tielbeek, J. A. W., Makanyanga, J., Menys, A., Ponsioen, C. Y., Hatzakis, H., Taylor, S. A., Stoker, J., Van Vliet, L. J. & Vos, F. M., 2017, In : British Journal of Radiology. 90, 1074, 20160654.

Research output: Contribution to journalArticleScientificpeer-review

7 Citations (Scopus)

Simulation of scanner- and patient-specific low-dose CT imaging from existing CT images

Naziroglu, R., van Ravesteijn, V., van Vliet, L., Streekstra, G. J. & Vos, F., 2017, In : Physica Medica: an international journal devoted to the applications of physics to medicine and biology. 36, p. 12-23 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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6 Citations (Scopus)
97 Downloads (Pure)
2016

Active learning based segmentation of Crohns disease from abdominal MRI

Mahapatra, D., Vos, FM. & Buhmann, JM., 2016, In : Computer Methods and Programs in Biomedicine. 128, p. 75-85

Research output: Contribution to journalArticleScientificpeer-review

5 Citations (Scopus)

Image registration based on autocorrelation of local structure

Li, Z., Mahapatra, D., Tielbeek, JAW., Stoker, J., van Vliet, LJ. & Vos, FM., 2016, In : IEEE Transactions on Medical Imaging. 35, 1, p. 63-75 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
37 Citations (Scopus)

Improved registration of DCE-MR images of the liver using a prior segmentation of the region of interest

Zhang, T., Li, Z., Runge, J. H., Lavini, C., Stoker, J., Van Gulik, T., Van Vliet, L. J. & Vos, F. M., 2016, Medical Imaging 2016: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). SPIE, Vol. 9784. 8 p. 978443. (Proceedings of SPIE; vol. 9784).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
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3 Citations (Scopus)
27 Downloads (Pure)

Reliable Dual Tensor Model Estimation in Single and Crossing Fibers Based on Jeffreys Prior

Yang, J., Poot, D. HJ., Caan, M. WA., Su, T., Majoie, C. BLM., van Vliet, L. J. & Vos, F. M., 2016, In : PLoS ONE. 11, 10, 24 p., e0164336.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Citations (Scopus)
131 Downloads (Pure)

White matter structure alterations in HIV-1-infected men with sustained suppression of viraemia on treatment

Su, T., Caan, MWA., Wit, FWNM., Schouten, J., Geurtsen, GJ., Cole, JH., Sharp, DJ., Vos, FM., Prins, M., Portegies, P., Reiss, P. & Majoie, CB., 2016, In : AIDS. 30, 2, p. 311-322 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
25 Citations (Scopus)
2015

Combining multiple expert annotations using semi-supervised learning and graph cuts for Crohn¿s disease segmentation

Mahapatra, D., Schüffler, PJ., Tielbeek, JAW., Puylaert, CAJ., Makanyanga, JC., Menys, A., Andriantsimiavona, R., Stoker, J., Taylor, SA., Vos, FM. & Buhmann, JM., 2015, Abdominal Imaging. Computational and Clinical Applications: Proceedings - 6th International Workshop, ABDI 2014, held in conjunction with MICCAI 2014. Yoshida, H., Näppi, JJ. & Saini, S. (eds.). Cham, Switzerland: Springer, p. 139-147 9 p. (Lecture Notes in Computer Science; vol. 8676).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access

Crohn¿s disease segmentation from MRI using learned image priors

Mahapatra, D., Schuffler, P., Vos, FM. & Buhmann, JM., 2015, IEEE Symposium on Medical Imaging (ISBI). s.n. (ed.). IEEE Society, p. 625-628 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
1 Citation (Scopus)

CSF contamination-invariant statistics in diffusion-weighted MRI

Arkesteijn, GAM., Poot, DHJ., de Groot, M., Vernooij, MW., Niessen, WJ., van Vliet, LJ. & Vos, FM., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway: IEEE Society, p. 454-457 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
3 Citations (Scopus)

Estimating diffusion properties in complex fiber configurations based on structure-adaptive multi-valued tensor-field filtering

Yang, J., Poot, DHJ., Arkesteijn, GAM., Caan, MWA., van Vliet, LJ. & Vos, FM., 2015, Medical Imaging 2015: Image Processing. Ourselin, S. & Styner, MA. (eds.). Bellingham, WA, USA: SPIE, p. 1-7 7 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 9413).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access

Estimation of diffusion properties in three-way fiber crossings without overfitting

Yang, J., Poot, DHJ., van Vliet, LJ. & Vos, FM., 2015, In : Physics in Medicine and Biology. 60, 23, p. 9123-9144 22 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Expiration-phase template-based motion correction of free-breathing abdominal dynamic contrast enhanced MRI

Li, Z., Tielbeek, JAW., Caan, MWA., Puylaert, CAJ., Ziech, MLW., Nio, CY., Stoker, J., van Vliet, LJ. & Vos, FM., 2015, In : IEEE Engineering in Medicine and Biology Magazine. 62, 4, p. 1215-1225 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
13 Citations (Scopus)

Feasibility of a fast method for B1-inhomogeneity correction for FSPGR sequences

van Schie, JJN., Lavini, C., van Vliet, LJ. & Vos, FM., 2015, In : Magnetic Resonance Imaging. 33, 3, p. 312-318 7 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Image registration based on the structure tensor of the local phase

Li, Z., van Vliet, LJ., Stoker, J. & Vos, FM., 2015, Medical Imaging 2015: Image Processing. Ourselin, S. & Styner, MA. (eds.). Bellingham, WA, USA: SPIE, p. 1-6 6 p. (Proceedings of SPIE- International Society for Optical Engineering; vol. 9413).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access

Joint segmentation and groupwise registration of cardiac DCE MRI using sparse data representations

Mahapatra, D., Li, Z., Vos, FM. & Buhmann, J., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Angelini, E. & Kova¿evi¿, J. (eds.). Piscataway: IEEE Society, p. 1312-1315 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
1 Citation (Scopus)

Rank-2 model-order selection in diffusion tensor MRI: Infromation complexity based on the total Kullback-Leibler divergence

Yang, J., Poot, DHJ., Caan, MWA., Vos, FM. & van Vliet, LJ., 2015, Proceedings of the 12th IEEE International Symposium on Biomedical Imaging. Kova¿evi¿, J. & Angelini, E. (eds.). Piscataway, NJ, USA: IEEE Society, p. 926-929 4 p.

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
1 Citation (Scopus)
2014

Evaluation of conventional, dynamic contrast enhanced and diffusion weighted MRI for quantitative Chrohn's disease assessment with histopathology of surgical specimens

Tielbeek, JAW., Ziech, MLW., Li, Z. & Vos, FM., 2014, In : European Radiology. 24, 3, p. 619-629 11 p.

Research output: Contribution to journalArticleScientificpeer-review

125 Citations (Scopus)

Feasibility of a Fast Method for B1-Inhomogeneity Correction for FSPGR sequences Magnetic Resonance Imaging

van Schie, JJN., Lavina, C., van Vliet, LJ. & Vos, FM., 2014, In : Magnetic Resonance Imaging. p. 1-10 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2013

A Supervised Learning Approach for Crohn's Disease Detection Using Higher-Order Image Statistics and a Novel Shape Asymmetry Measure

Mahapatra, D., Schueffler, P., Tielbeek, JAW., Buhmann, JM. & Vos, FM., 2013, In : Journal of Digital Imaging. 26, p. 920-931 12 p.

Research output: Contribution to journalArticleScientificpeer-review

9 Citations (Scopus)

A three-dimensional analysis of osteoarthritic changes in the thumb carpometacarpal joint

de Raedt, S., Stilling, M., van de Giessen, M., Streekstra, G. J., Vos, FM. & Hansen, TB., 2013, In : Journal of Hand Surgery (European Volume). 38, 8, p. 851-859 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
3 Citations (Scopus)