J.J. Heijnen

Search results

• 2009

  Construction of kinetic models for metabolic reaction networks: Lessons learned in analyzing short term stimulus response data

  Nikerel, IE., Canelas, A., Jol, SJ., Verheijen, PJT. & Heijnen, JJ., 2009, MATHMOD 09 Vienna. Torch, I. & Breitenecker, F. (eds.). Vienna: Argesim, p. 805-814 10 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Identification of lin-log kinetics for the central metabolism of E. coli

  Bernaerts, K., Taymaz, H., Heijnen, JJ., van Gulik, WM. & Verheijen, PJT., 2009, Proceeding of the Third International Conference on Foundations of System Biology in Engineering. Hahn, J. & Rao, C. (eds.). Denver, Colorado: FOSBE, p. 189-192 4 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific
• 2008

  Identifying the regulatory structure of metabolic networks: a constrained optimization approach

  Bellomo, D., de Ridder, D., Rossell, S., Verheijen, PJT., Reinders, MJT. & Heijnen, JJ., 2008, Proceedings of the fourteenth annual conference of the Advanced School for Computing and Imaging. Smit, GJM., Epema, DHJ. & Lew, MS. (eds.). Delft: ASCI, p. 250-257 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2007

  Identifiability of metabolic networks in pulse experiments

  Bellomo, D., de Ridder, D., Heijnen, JJ., Reinders, MJT., van Winden, WA. & Verheijen, PJT., 2007, Proceedings of the thrirteenth annual conference of the Advanced School for Computing and Imaging. Jansen, F. W., Pierre, G. E. O., Veenman, C. J. & Heijnsdijk, J. W. J. (eds.). Delft: ASCI, p. 267-274 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2006

  Crystallization of L-phenylalanine anhydrate for product recovery during fermentation

  Cuellar, MC., Sanchez Garcia, D., Straathof, AJJ., Heijnen, JJ. & van der Wielen, LAM., 2006, BIWIC 2006. Jansens, P., ter Horst, J. & Jiang, S. (eds.). Amsterdam: IOS Press, p. 73-78 6 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Integrated electrochemical sensor array for on-line monitoring of yeast fermentations

  Krommenhoek, EE., Gardeniers, J. G. E., Bomer, J. G., Van Den Berg, A., Li, X., Ottens, M., Van Der Wielen, L. A. M., Van Dedem, G. W. K., Van Leeuwen, M., Van Gulik, W. M. & Heijnen, J. J., 2006, Micro Total Analysis Systems - Proceedings of MicroTAS 2006 Conference: 10th International Conference on Miniaturized Systems for Chemistry and Life Sciences. Japan Academic Association Inc, p. 729-731 3 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • fermentation 100%
  • yeasts 100%
  • electrochemistry 100%
  • monitoring 100%
  • sensors 100%

• Linear-logarithmic kinetics, a framework for modeling kinetics of metabolic reaction networks

  Nikerel, IE., van Winden, WA., van Gulik, WM. & Heijnen, JJ., 2006, Proceedings 5th MATHMOD, Vienna, February 2006, session Modelling and Simulation in Systems Biology. Troch, I. & Breitenecker, F. (eds.). Vienna: Argesim-Verlag, p. 3-1-3-10

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2005

  Effect of fermentation co-solutes on the crystallization of levodione

  Buque-Taboada, E. M., Straathof, A. J. J., Heijnen, J. J. & Van Der Wielen, L. A. M., 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. Bhamidi, V. (ed.). AIChE, p. 2275-2276 2 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • fermentation 100%
  • crystallization 100%
  • solutes 100%
  • Water 100%
  • Process Engineering 100%

• In situ product removal by direct crystallization: An attractive approach for process integration of whole-cell biocatalyzed reactions

  Buque-Taboada, E. M., Straathof, A. J. J., Heijnen, J. J. & Van Der Wielen, L. A. M., 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Cincinnati, OH; United States; 30 October 2005 through 4 November 2005. AIChE, p. 12133-12134

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • crystallization 100%
  • removal 100%
  • Product 100%
  • Process Integration 100%
  • In Situ Product Removal 100%

• Monitoring of yeast cell concentration using a micromachined impedance sensor (niet eerder opgenomen)

  Krommenhoek, EE., Gardeniers, JGE., Bomer, JG., van den Berg, A., Li, X., Ottens, M., van der Wielen, LAM., van Dedem, GWK., van Leeuwen, M., van Gulik, WM. & Heijnen, JJ., 2005, 13th International Conference on Solid State Sensors, Actuators and Microsystems, 5-9 June 2005. Sohn, B. K. (ed.). New York: IEEE, p. 283-286 4 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Optimizing mixing in micro-bioreactors used for high throughput screening of suitable biocatalysts in industrial fermentation

  Li, X., Ottens, M., Van Dedem, G. W. K., Van Der Wielen, L. A. M., Van Leeuwen, M., Van Gulik, W., Heijnen, J. J., Krommenhoek, EE., Gardeniers, J. G. E. & Van Den Berg, A., 2005, 05AIChE: 2005 AIChE Annual Meeting and Fall Showcase, Conference Proceedings. p. 8696 1 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • fermentation 100%
  • screening 100%
  • bioreactors 100%
  • optimization 100%
  • mixing 100%

• Towards the integration of fermentation and crystallisation. Proceeding of the 16th International Symposium on Industrial Crystallization, Dresden

  Cuellar, MC., Straathof, AJJ., Heijnen, JJ. & van der Wielen, LAM., 2005, VDI-Berichte 1901.2. Ulrich, J. (ed.). Dusseldorf: VDI Verlag GMBH, p. 975-980 6 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2004

  Biological iron oxidation by Thiobacillus ferrooxidans and Leptospirillum ferrooxidans in a biofilm airlift reactor

  Ebrahimi, S., Kleerebezem, R., Heijnen, JJ., van Loosdrecht, MCM. & Morales, FJ., 2004, European Symposium on Environmental Biotechnology, ESEB 2004, 25-28 April 2004, Oostende, Belgium. Verstraete, W. (ed.). London: Taylor & Francis, p. 175-179 5 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Filamentous bacterial structures: a unifying theory supported by experimental evidences

  Martins, AMP., Picioreanu, C., Heijnen, JJ. & van Loosdrecht, MCM., 2004, Proceedings of the European Symposium on Environmental Biotechnology, (ESEB), 25-28 April 2004, Oostende, Belgium. Editor Verstraete, W. (ed.). London: Taylor & Francis, p. 191-194 4 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Influence of microbial cultivation during bio-reduction with in-situ product crystallization (ISPC)

  Buque-Taboada, E. M., Straathof, A. J. J., Heijnen, J. J. & Van Der Wielen, L. A. M., 2004, 2004 AIChE Annual Meeting, Austin, TX; United States; 7 November 2004 through 12 November 2004. AIChE, p. 8627-8632

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • crystallization 100%
  • reduction 100%
  • cultivation 100%
  • Bioreduction 100%
  • Microbial Cultivation 100%

• The monolith reactor - a novel reactor concept for biological gas purification

  Ebrahimi, S., Kleerebezem, R., Heijnen, JJ., van Loosdrecht, MCM. & Kreutzer, MT., 2004, European Symposium on Environmental biotechnology, ESEB 2004, 25-28 April 2004, Oostende, Belgium. Verstraete, W (ed.). London: Taylor & Francis, p. 865-868 4 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2003

  Efficient modeling of 13C-labeling distributions in microorganisms

  van Winden, WA., Verheijen, PJT. & Heijnen, JJ., 2003, European Symposium on Computer-Aided Engineering - 13, Lappeenranta, Finland, 1-4 June, 2003. Kraslawski, A. & Turunen, I. (eds.). Amsterdam, The Netherlands: Elsevier, p. 1133-1138 6 p. (Computer-Aided Chemical Engineering; vol. 14).

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2002

  Aerobic Granular Sludge Formation

  van Loosdrecht, MCM., de Kreuk, MK., Picioreanu, C. & Heijnen, JJ., 2002, Granulation and auto-immobilisation processes in wastewater treatment. Papers of the Farewell Seminar of Dr.ir. Look Hulshoff Pol, Wageningen, 28 June, 2002. van Lier, J., Lexmond, M. & Vos, H. (eds.). Wageningen: Lettinga Associates Foundation, p. 81-96 16 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Construction of a streptomyces specific metabolic flux model from genomic and physiological data

  Krabben, P., Roubos, JA., Luiten, RGM. & Heijnen, JJ., 2002, Proceedings Metabolic Engineering III. Sinskey, AJ. (ed.). Colorado Springs - USA, p. -

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review
• 2001

  A semi-stochiometric model for a streptomyces fed-batch cultivation with multiple feeds

  Roubos, JA., Krabben, P., Luiten, RGM., Babuska, R. & Heijnen, JJ., 2001, Proceedings. D Dochain & M Perrier (eds.). S.l.: IFAC, p. 299-304 6 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• A semi-stoichiometric model for a streptomyces fed-batch cultivation with multiple feeds.

  Roubos, JA., Krabben, P., Luiten, RGM., Babuska, R. & Heijnen, JJ., 2001, 8th International Conference on Computer Applications in Biotechnology.. Dochain, D. & Perrier, M. (eds.). IFAC/EFB, p. 299-304 6 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Error diagnostics and data reconciliation for Activated sludge modelling purposes using linear conservation relations.

  Meijer, SCF., van der Spoel, WH., Heijnen, JJ. & van Loosdrecht, MCM., 2001, Proceedings Activated Sludge Modelling Fifth Kollekolle Seminar, Modelling of Activated Sludge Processes in Theory and Practise. Henze, M. (ed.). p. 193-203 11 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Model-based evaluation of a new upgrading concept for N-removal.

  Salem, SAF., Berends, D., Heijnen, JJ. & van Loosdrecht, MCM., 2001, Proceedings Activated Sludge Modelling Fifth Kollekolle Seminar.. Henze, M. (ed.). p. 33-40 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Modelling of activated sludge processes with structured biomass.

  van Loosdrecht, MCM. & Heijnen, JJ., 2001, Proceedings activated sludge modelling fifth Kollekolle seminar.. Henze, M. (ed.). p. 97-106 10 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific
• 2000

  A dedicated computer system for FM-CW radar applications

  Heijnen, JJ., van Sinttruijen, JS., van der Zwan, WF. & Ligthart, LP., 2000, MIKON 2000 conference proceedings Vol. 1. S.l.: Telecommunications Research Institute, p. 223-226 4 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  3 Citations (Scopus)

• Contribution of P-bacteria in BNR processes to overall effects on the environment.

  Hao, X., Heijnen, JJ., Qian, Y. & van Loosdrecht, MCM., 2000, Proceedings of the conference on Wastewater and EU-Nutrient Guidelines. Implementation of the use of EU Nutrient Emission Guidelines.. van der Vlies, A. (ed.). London, UK: International Water Association (IWA), p. 82-92 11 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Novel bioprocesses and bioreactors.

  van Loosdrecht, MCM., Nicolella, C. & Heijnen, JJ., 2000, Biotechnology 2000.. von der Lith, CW. & Steitz, T. (eds.). p. 333-334 2 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Poly-beta-alkanoate metabolism in activated sludge.

  van Loosdrecht, MCM., Beun, JJ. & Heijnen, JJ., 2000, The international symposium of the Center of Excellence on establishment and evaluation of advanced water treatment technology systems using functions of complex microbial community.. Satoh, H., Mino, T. & Matsuo, T. (eds.). Tokyo, Japan: COE-project, Dept Urban Engineering, Univ. Tokyo, p. 207-216 10 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Possibilities for a more sustainable wastewater treatment.

  van Loosdrecht, MCM. & Heijnen, JJ., 2000, Proceedings in The 4th Japan-Netherlands CREST Workshop on Integrated Water Quality Management.. Watanabe, Y. (ed.). Japan Science and Technology Corporation, p. 283-295 13 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific
• 1999

  Aerobic granulation

  Beun, JJ., van Loosdrecht, MCM. & Heijnen, JJ., 1999, Program and Proceedings. Conference on Biofilm Systems. Rogalla, F. (ed.). New York: IAWQ, p. 80-87 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• An innovative moving bed biofilm airlift suspension reactor for nitrification of municipal wastewater

  Huau, MC., Coquet, Y., van Loosdrecht, MCM. & Heijnen, JJ., 1999, Program and Proceedings. Conference on Biofilm Systems. Rogalla, F. (ed.). New York: IAWQ, p. 216-223 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Characteristics of biofilm in a BAS reactor

  Ong, SL., Ng, WJ., van Loosdrecht, MCM. & Heijnen, JJ., 1999, Program and Proceedings. Conference on Biofilm Systems. Rogalla, F. (ed.). New York: IAWQ, p. 268-271 4 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Hybrid model development for fed-batch bioprocesses; combining physical equations with the metabolic network and black-box kinetics

  Roubos, JA., Krabben, P., Setnes, M., Babuska, R., Heijnen, JJ. & Verbruggen, HB., 1999, 6th UK Workshop on Fuzzy systems, Recent advances of fuzzy systems, nunal fuzzy, fuzzy genetic and soft computing systems. Nyongesa, HO., Linkens, DA. & Manfouf, M. (eds.). p. 231-239 9 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Hybrid model development for fed-batch bioprocesses: combining physical equations with the metabolic network and black-box kinetics

  Roubos, JA., Krabben, P., Setnes, M., Babuska, R., Heijnen, JJ. & Verbruggen, HB., 1999, Recent advances & practical applications of fuzzy systems, neural fuzzy, fuzzy genetic and soft computing systems. S.l.: s.n., p. 231-239 9 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Hybrid models for fed-batch bioprocesses; combining mass balances with the metabolic network and black-box kinetics

  Roubos, JA., Krabben, P., Setnes, M., Babuska, R., Heijnen, JJ. & Verbruggen, HB., 1999, Proceedings Workshop on Applications in chemical and biochemical industry, EUFIT '99. Leiviskä, K. (ed.). p. -

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Hybrid models for fed-batch bioprocesses: combining mass balances with the metabolic network and black-box kinetics

  Roubos, JA., Krabben, P., Setnes, M., Babuska, R., Heijnen, JJ. & Verbruggen, HB., 1999, EUFIT'99: proceedings [CD-ROM]. H-J Zimmermann (ed.). Aachen: Mainz, p. 1-9 9 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Influence of different substrates on the formation of biofilms in a biofilm airlift suspension reactor

  Villasenor, JC., van Loosdrecht, MCM., Picioreanu, C. & Heijnen, JJ., 1999, Program and Proceedings. Conference on Biofilm Systems. Rogalla, F. (ed.). New York: IAWQ, p. 821-828 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific

• Integration of nitrification and denitrification in biofilm airlift suspension reactors

  van Loosdrecht, MCM., van Benthum, WAJ. & Heijnen, JJ., 1999, Program and Proceedings. Conference on Biofilm Systems. Rogalla, F. (ed.). New York: IAWQ, p. 172-179 8 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific
• 1998

  Discrete-differential modelling of biofilm structure.

  Picioreanu, C., van Loosdrecht, MCM. & Heijnen, JJ., 1998, Conference proceedings international specialty conference Microbial Ecology of Biofilms: Concepts, Tools and Applications.. Rittmann, BE., Bishop, P., Bouwer, E. & Cunningham, A. (eds.). p. 144-159 16 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Error diagnosis and data reconciliation using linear conservation relations.

  Hellinga, C., Romein, B., Heijnen, JJ. & Luyben, KCM., 1998, Advanced instrumentation, data interpretation and control of biotechnological processes.. van Impe, JFM. & Vanrolleghem, PA. (eds.). Amsterdam: Kluwer Academic Publishers, p. 211-243 33 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

• Multidimensional modelling of biofilm structure.

  Picioreanu, C., van Loosdrecht, MCM. & Heijnen, JJ., 1998, Proceedings of the 8th International Symposium on Microbial Ecology.. Bell, CR., Brylinski, M. & Johnson-Green, P. (eds.). Halifax, Canada: Microbial Biosystems: New Frontiers ..... Microbial Ecology, p. 905-916 12 p.

  Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific