Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Keywords (LCC)
- QA75 Electronic computers. Computer science
- Algorithmics
- Machine Learning
- Selection Bias
- Multimodal Learning
- Semi-Supervised Learning
- RM Therapeutics. Pharmacology
- Synthetic lethality
- Gene essentiality
- DNA repair deficiency
- Mutational signatures
- Gene regulation
- Molecular biomedicine
- Precision medicine
- Targeted therapy
- CRISPR
- Molecular perturbations
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MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis
Seale, C. F., Barazas, M., van Schendel, R., Tijsterman, M. & P. Gonçalves, J., 28 Jan 2025.Research output: Working paper/Preprint › Preprint
Open Access -
X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction
Seale, C. F. & P. Gonçalves, J., 8 Feb 2025.Research output: Working paper/Preprint › Preprint
Open Access -
Correction to: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) (Nature Cell Biology, (2023), 25, 8, (1089-1100), 10.1038/s41556-023-01194-w)
Jain, S., Pei, L., Gonçalves, J. P., Liu, H., Robson, P., Van de Plas, R., Lardenoije, R., Migas, L. G., Moens, R. & More Authors, 2024, In: Nature Cell Biology. 26, 5, p. 839 1 p.Research output: Contribution to journal › Comment/Letter to the editor › Scientific › peer-review
Open AccessFile4 Downloads (Pure) -
DCAST: Diverse Class-Aware Self-Training Mitigates Selection Bias for Fairer Learning
Tepeli, Y. I. & P. Gonçalves, J., 8 Oct 2024.Research output: Working paper/Preprint › Preprint
Open Access -
Metric-DST: Mitigating Selection Bias Through Diversity-Guided Semi-Supervised Metric Learning
Tepeli, Y. I., de Wolf, M. J. & P. Gonçalves, J., 27 Nov 2024.Research output: Working paper/Preprint › Preprint
Open Access
Datasets
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Data and code underlying the publication: Stratifying Oncogene-addicted Cohorts by Drug Response
Gonçalves, J. (Creator), Tepeli, Y. I. (Creator), Trastulla, . (Creator) & Iorio, F. (Creator), TU Delft - 4TU.ResearchData, 21 Nov 2024
DOI: 10.4121/C269140B-9D5F-411B-BAFB-72AB8DBA45DA
Dataset/Software: Dataset
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Data and code underlying the publication: ELISL: Early-Late Integrated Synthetic Lethality Prediction in Cancer
Gonçalves, J. (Creator), Tepeli, Y. I. (Creator) & Seale, C. F. (Creator), TU Delft - 4TU.ResearchData, 25 Nov 2024
DOI: 10.4121/BF2BAEBA-7971-4954-ADE6-7097BE6492E9
Dataset/Software: Dataset
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Data and code underlying the publication: Metric-DST: Mitigating Selection Bias Through Diversity-guided Semi Supervised Metric Learning
Gonçalves, J. (Creator), Tepeli, Y. I. (Creator) & de Wolf, M. (Creator), TU Delft - 4TU.ResearchData, 25 Nov 2024
DOI: 10.4121/206EF581-11A1-4A01-9595-576E7EC8B7C1
Dataset/Software: Dataset
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Data and code underlying the publication: DCAST: Diverse Class-Aware Self-Training Mitigates Selection Bias for Fairer Learning
Gonçalves, J. (Creator) & Tepeli, Y. I. (Creator), TU Delft - 4TU.ResearchData, 25 Nov 2024
DOI: 10.4121/8648064E-AA7B-4A09-A755-7EB2D90BEF66
Dataset/Software: Dataset
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Data and code underlying the publication: MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis
Gonçalves, J. (Creator), Seale, C. F. (Creator), Barazas, M. (Creator), van Schendel, R. (Creator) & Tijsterman, M. (Creator), TU Delft - 4TU.ResearchData, 18 Feb 2025
DOI: 10.4121/B3F90F47-895B-4380-BF26-A79F76E9F47A
Dataset/Software: Software