Research output per year
Research output per year
Personal profile
Keywords (LCC)
- QA75 Electronic computers. Computer science
- Algorithmics
- Machine Learning
- Selection Bias
- Multimodal Learning
- Semi-Supervised Learning
- Trustworthy ML
- Robust ML
- RM Therapeutics. Pharmacology
- Synthetic lethality
- Gene function
- DNA repair deficiency
- Mutational signatures
- Gene regulation
- Molecular biomedicine
- Precision medicine
- Targeted therapy
- CRISPR
- Molecular perturbations
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 3 Good Health and Well-being
Fingerprint
Dive into the research topics where Joana Gonçalves is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 1 Similar Profiles
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LAVA: Explainability for Unsupervised Latent Embeddings
Stresec, I. & P. Gonçalves, J., 2025.Research output: Working paper/Preprint › Preprint
Open Access -
MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis
Seale, C. F., Barazas, M., van Schendel, R., Tijsterman, M. & P. Gonçalves, J., 2026, In: NAR Genomics and Bioinformatics. 8, 1, 12 p., lqaf202.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Downloads (Pure) -
DCAST: Diverse Class-Aware Self-Training Mitigates Selection Bias for Fairer Learning
Tepeli, Y. I. & P. Gonçalves, J., 2024, ArXiv.Research output: Working paper/Preprint › Preprint
Open Access -
SNMF: Integrated Learning of Mutational Signatures and Prediction of DNA Repair Deficiencies
Goossens, A. C. H., Tepeli, Y. I., Seale, C. F. & P. Gonçalves, J., 2024.Research output: Working paper/Preprint › Preprint
Open Access -
Etiology-guided mutational signature learning from DNA repair knockouts in cell lines using supervised NMF
Goossens, A. C. H., Tepeli, Y. I., Seale, C. F. & Gonçalves, J., 2026, In: NAR Genomics and Bioinformatics. 8, 3, 11 p., lqag078.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile
Datasets
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Data and code underlying the publication: Metric-DST: Mitigating Selection Bias Through Diversity-guided Semi Supervised Metric Learning
Gonçalves, J. (Creator), Tepeli, Y. I. (Creator) & de Wolf, M. (Creator), TU Delft - 4TU.ResearchData, 25 Nov 2024
DOI: 10.4121/206EF581-11A1-4A01-9595-576E7EC8B7C1
Dataset/Software: Dataset
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Data and code underlying the publication: ELISL: Early-Late Integrated Synthetic Lethality Prediction in Cancer
Gonçalves, J. (Creator), Tepeli, Y. I. (Creator) & Seale, C. F. (Creator), TU Delft - 4TU.ResearchData, 25 Nov 2024
DOI: 10.4121/BF2BAEBA-7971-4954-ADE6-7097BE6492E9
Dataset/Software: Dataset
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Data and code underlying the publication: DCAST: Diverse Class-Aware Self-Training Mitigates Selection Bias for Fairer Learning
Gonçalves, J. (Creator) & Tepeli, Y. I. (Creator), TU Delft - 4TU.ResearchData, 25 Nov 2024
DOI: 10.4121/8648064E-AA7B-4A09-A755-7EB2D90BEF66
Dataset/Software: Dataset
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Data and code underlying the publication: Stratifying Oncogene-addicted Cohorts by Drug Response
Gonçalves, J. (Creator), Tepeli, Y. I. (Creator), Trastulla, . (Creator) & Iorio, F. (Creator), TU Delft - 4TU.ResearchData, 21 Nov 2024
DOI: 10.4121/C269140B-9D5F-411B-BAFB-72AB8DBA45DA
Dataset/Software: Dataset
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Data and code underlying the publication: X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction
Gonçalves, J. (Creator) & Seale, C. F. (Creator), TU Delft - 4TU.ResearchData, 18 Feb 2025
DOI: 10.4121/709D3D46-3D48-478C-A246-970FE325E236
Dataset/Software: Software