Martin Pabst

A close look at human IgG sialylation and subclass distribution after lectin fractionation

Stadlmann, J., Weber, A., Pabst, M., Anderle, H., Kunert, R., Ehrlich, H. J., Schwarz, H. P. & Friedrich, A., 1 Sept 2009, In: Proteomics. 9, 17, p. 4143-4153 11 p.

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88 Citations (Scopus)

Adaptation of anammox bacteria to low temperature via gradual acclimation and cold shocks: Distinctions in protein expression, membrane composition and activities

V, K., D, V., E, Z., K, H., K, N., M, L., M, P., MCM, V. L. & DG, W., 2022, In: Water Research. 209, 117822.

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15 Citations (Scopus)

49 Downloads (Pure)

Aerobic granular sludge phosphate removal using glucose

Elahinik, A., Li, L., Pabst, M., Abbas, B., Xevgenos, D., van Loosdrecht, M. C. M. & Pronk, M., 2023, In: Water Research. 247, 10 p., 120776.

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1 Citation (Scopus)

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A general approach to explore prokaryotic protein glycosylation reveals the unique surface layer modulation of an anammox bacterium

Pabst, M., Grouzdev, D. S., Lawson, C. E., Kleikamp, H. B. C., de Ram, C., Louwen, R., Lin, Y. M., Lücker, S., van Loosdrecht, M. C. M. & Laureni, M., 2021, In: ISME Journal. 16, 2, p. 346-357 12 p.

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6 Citations (Scopus)

A microarray-matrix-assisted laser desorption/ionization-mass spectrometry approach for site-specific protein nglycosylation analysis, as demonstrated for human serum immunoglobulin M (IgM)

Pabst, M., Küster, S. K., Wahl, F., Krismer, J., Dittrich, P. S. & Zenobi, R., 2015, In: Molecular and Cellular Proteomics. 14, 6, p. 1645-1656

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19 Citations (Scopus)

Anaerobic carboxydotrophy in sulfur-respiring haloarchaea from hypersaline lakes

Sorokin, D. Y., Merkel, A. Y., Messina, E., Tugui, C., Pabst, M., Golyshin, P. N. & Yakimov, M. M., 2022, In: ISME Journal. 16, 6, p. 1534-1546 13 p.

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4 Citations (Scopus)

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Analysis of immunoglobulin glycosylation by LC-ESI-MS of glycopeptides and oligosaccharides

Stadlmann, J., Pabst, M., Kolarich, D., Kunert, R. & Altmann, F., 1 Jul 2008, In: Proteomics. 8, 14, p. 2858-2871 14 p.

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275 Citations (Scopus)

Analysis of recombinant human follicle-stimulating hormone (FSH) by mass spectrometric approaches

Grass, J., Pabst, M., Chang, M., Wozny, M. & Altmann, F., 2011, In: Analytical and Bioanalytical Chemistry. 400, 8, p. 2427-2438

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37 Citations (Scopus)

Analysis of single algal cells by combining mass spectrometry with Raman and fluorescence mapping

Fagerer, S. R., Schmid, T., Ibáñez, A. J., Pabst, M., Steinhoff, R., Jefimovs, K., Urban, P. L. & Zenobi, R., 2013, In: Analyst. 138, 22, p. 6732-6736 5 p.

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44 Citations (Scopus)

Analysis of the proteins secreted by Trichoderma harzianum P49P11 under carbon-limited conditions

Gelain, L., Pabst, M., da Cruz Pradella, J. G., da Costa, A. C., van der Wielen, L. & van Gulik, W. M., 2020, In: Journal of Proteomics. 227, 7 p., 103922.

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2 Citations (Scopus)

66 Downloads (Pure)

A new allergen from ragweed (Ambrosia artemisiifolia) with homology to art v 1 from mugwort

Léonard, R., Wopfner, N., Pabst, M., Stadlmann, J., Petersen, B. O., Duus, J., Himly, M., Radauer, C., Gadermaier, G., Razzazi-Fazeli, E., Ferreira, F. & Altmann, F., 27 Aug 2010, In: Journal of Biological Chemistry. 285, 35, p. 27192-27200 9 p.

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68 Citations (Scopus)

A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway

Valk, L. C., Luttik, M. A. H., de Ram, C., Pabst, M., van den Broek, M., van Loosdrecht, M. C. M. & Pronk, J. T., 2020, In: Frontiers in Microbiology. 10, 16 p., 3027.

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15 Citations (Scopus)

112 Downloads (Pure)

Arabidopsis thaliana alpha1,2-glucosyltransferase (ALG10) is required for efficient N-glycosylation and leaf growth

Farid, A., Pabst, M., Schoberer, J., Altmann, F., Glössl, J. & Strasser, R., 2011, In: Plant Journal. 68, 2, p. 314-325

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40 Citations (Scopus)

A systematic evaluation of yeast sample preparation protocols for spectral identifications, proteome coverage and post-isolation modifications

den Ridder, M., Knibbe, E., van den Brandeler, W., Daran-Lapujade, P. & Pabst, M., 2022, In: Journal of Proteomics. 261, 13 p., 104576.

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5 Citations (Scopus)

103 Downloads (Pure)

Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo ¹³C and ²H metabolic network mapping

Lawson, C. E., Nuijten, G. H. L., de Graaf, R. M., Jacobson, T. B., Pabst, M., Stevenson, D. M., Jetten, M. S. M., Noguera, D. R., McMahon, K. D. & More Authors, 2020, In: ISME Journal. 15, 3, p. 673-687 15 p.

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58 Citations (Scopus)

35 Downloads (Pure)

Biocatalytic Aromaticity-Breaking Epoxidation of Naphthalene and Nucleophilic Ring-Opening Reactions

Zhang, W., Li, H., Younes, S. H. H., Gómez De Santos, P., Tieves, F., Grogan, G., Pabst, M., Alcalde, M., Whitwood, A. C. & Hollmann, F., 2021, In: ACS Catalysis. 11, 5, p. 2644-2649

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11 Citations (Scopus)

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Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host

D'Angelo, F., Fernández-Fueyo, E., Garcia, P. S., Shomar, H., Cebola Rebelo Manuel, R. S., Büke, F., van den Broek, N., de Ram, C., Pabst, M. & More Authors, 2022, In: eLife. 11, 26 p., e70936.

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6 Citations (Scopus)

38 Downloads (Pure)

Characterisation of the E. coli HMS174 and BLR host cell proteome to guide purification process development

Disela, R., Bussy, O. L., Geldhof, G., Pabst, M. & Ottens, M., 2023, In: Biotechnology Journal. 18, 9, 13 p., 2300068.

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2 Citations (Scopus)

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Characterization and scope of S-layer protein O-glycosylation in Tannerella forsythia

Posch, G., Pabst, M., Brecker, L., Altmann, F., Messner, P. & Schäffer, C., 2011, In: Journal of Biological Chemistry. 286, 44, p. 38714-38724

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72 Citations (Scopus)

Characterization of a plant-produced recombinant human secretory IgA with broad neutralizing activity against HIV

Paul, M., Reljic, R., Klein, K., Drake, P. M. W., Van Dolleweerd, C., Pabst, M., Windwarder, M., Arcalis, E., Stoger, E. & More Authors, 2014, In: mAbs. 6, 6, p. 1585-1597

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42 Citations (Scopus)

Characterization of plants expressing the human β1,4-galactosyltrasferase gene

Schneider, J., Castilho, A., Pabst, M., Altmann, F., Gruber, C., Strasser, R., Gattinger, P., Seifert, G. J. & Steinkellner, H., 2015, In: Plant Physiology and Biochemistry. 92, p. 39-47

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28 Citations (Scopus)

Characterization of α-l-Iduronidase (Aldurazyme®) and its complexes

Jung, G., Pabst, M., Neumann, L., Berger, A. & Lubec, G., 2013, In: Journal of Proteomics. 80, p. 26-33

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4 Citations (Scopus)

Comparative proteome analysis of different Saccharomyces cerevisiae strains during growth on sucrose and glucose

Soares Rodrigues, C. I., den Ridder, M., Pabst, M., Gombert, A. K. & Wahl, S. A., 2023, In: Scientific Reports. 13, 1, 10 p., 2126.

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3 Citations (Scopus)

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Comparison of fluorescent labels for oligosaccharides and introduction of a new postlabeling purification method

Pabst, M., Kolarich, D., Pöltl, G., Dalik, T., Lubec, G., Hofinger, A. & Altmann, F., 15 Jan 2009, In: Analytical Biochemistry. 384, 2, p. 263-273 11 p.

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129 Citations (Scopus)

Construction of a functional CMP-sialic acid biosynthesis pathway in Arabidopsis

Castilho, A., Pabst, M., Leonard, R., Veit, C., Altmann, F., Mach, L., Glössl, J., Strasser, R. & Steinkellner, H., 1 May 2008, In: Plant Physiology. 147, 1, p. 331-339 9 p.

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63 Citations (Scopus)

Craspase is a CRISPR RNA-guided, RNA-activated protease

Hu, C., van Beljouw, S. P. B., Nam, K. H., Schuler, G., Rodríguez Molina, A., van Eijkeren-Haagsma, A. C., Valk, M., Pabst, M., Brouns, S. J. J. & More Authors, 2022, In: Science. 377, 6612, p. 1278-1285

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10 Citations (Scopus)

288 Downloads (Pure)

"cross-glycosylation" of proteins in Bacteroidales species

Posch, G., Pabst, M., Neumann, L., Coyne, M. J., Altmann, F., Messner, P., Comstock, L. E. & Schäffer, C., 2013, In: Glycobiology. 23, 5, p. 568-577

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25 Citations (Scopus)

Database-independent de novo metaproteomics of complex microbial communities

Kleikamp, H. B. C., Pronk, M., Tugui, C., Guedes da Silva, L., Abbas, B., Lin, Y. M., van Loosdrecht, M. C. M. & Pabst, M., 2021, In: Cell Systems. 12, 5, p. 375-383.e5

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19 Citations (Scopus)

Decorating the Anammox House: Sialic Acids and Sulfated Glycosaminoglycans in the Extracellular Polymeric Substances of Anammox Granular Sludge

Boleij, M., Kleikamp, H., Pabst, M., Neu, T. R., van Loosdrecht, M. C. M. & Lin, Y., 2020, In: Environmental science & technology. 54, 8, p. 5218-5226 9 p.

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40 Citations (Scopus)

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Design and Experimental Evaluation of a Minimal, Innocuous Watermarking Strategy to Distinguish Near-Identical DNA and RNA Sequences

Boonekamp, F. J., Dashko, S., Duiker, D., Gehrmann, T., van den Broek, M., den Ridder, M., Pabst, M., Robert, V., Abeel, T., Postma, E. D., Daran, J. M. & Daran-Lapujade, P., 2020, In: ACS Synthetic Biology. 9, 6, p. 1361-1375 15 p.

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6 Citations (Scopus)

156 Downloads (Pure)

Differential Isotope Labeling of Glycopeptides for Accurate Determination of Differences in Site-Specific Glycosylation

Pabst, M., Benešová, I., Fagerer, S. R., Jacobsen, M., Eyer, K., Schmidt, G., Steinhoff, R., Krismer, J., Wahl, F. & More Authors, 2016, In: Journal of Proteome Research. 15, 1, p. 326-331

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15 Citations (Scopus)

Discovery and structural characterization of fucosylated oligomannosidic N-glycans in mushrooms

Grass, J., Pabst, M., Kolarich, D., Pöltl, G., Léonard, R., Brecker, L. & Altmann, F., 2011, In: Journal of Biological Chemistry. 286, 8, p. 5977-5984

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27 Citations (Scopus)

Down-regulation of UDP-glucuronic acid biosynthesis leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides

Reboul, R., Geserick, C., Pabst, M., Frey, B., Wittmann, D., Lütz-Meindl, U., Léonard, R. & Tenhaken, R., 2011, In: Journal of Biological Chemistry. 286, 46, p. 39982-39992

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94 Citations (Scopus)

Enrichment and application of extracellular nonulosonic acids containing polymers of Accumulibacter

Tomás-Martínez, S., Chen, L. M., Pabst, M., Weissbrodt, D. G., van Loosdrecht, M. C. M. & Lin, Y., 2022, In: Applied Microbiology and Biotechnology. 107, 2-3, p. 931-941 11 p.

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Eukaryotic extracellular catalase-peroxidase from Magnaporthe grisea - Biophysical/chemical characterization of the first representative from a novel phytopathogenic KatG group

Zámocký, M., Droghetti, E., Bellei, M., Gasselhuber, B., Pabst, M., Furtmüller, P. G., Battistuzzi, G., Smulevich, G. & Obinger, C., 2012, In: Biochimie. 94, 3, p. 673-683

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27 Citations (Scopus)

Exploring the role of antimicrobials in the selective growth of purple phototrophic bacteria through genome mining and agar spot assays

Alloul, A., Van Kampen, W., Cerruti, M., Wittouck, S., Pabst, M. & Weissbrodt, D. G., 2022, In: Letters in Applied Microbiology. 75, 5, p. 1275-1285

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Expression of antibody fragments with a controlled N-glycosylation pattern and induction of endoplasmic reticulum-derived vesicles in seeds of Arabidopsis

Loos, A., van Droogenbroeck, B., Hillmer, S., Grass, J., Pabst, M., Castilho, A., Kunert, R., Liang, M., Arcalis, E. & More Authors, 2011, In: Plant Physiology. 155, 4, p. 2036-2048

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47 Citations (Scopus)

Extracting and characterizing protein-free megabase-pair DNA for in vitro experiments

Holub, M., Birnie, A., Japaridze, A., van der Torre, J., Ridder, M. D., de Ram, C., Pabst, M. & Dekker, C., 2022, In: Cell Reports Methods. 2, 12, 17 p., 100366.

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Full humanization of the glycolytic pathway in Saccharomyces cerevisiae

Boonekamp, F. J., Knibbe, E., Vieira-Lara, M. A., Wijsman, M., Luttik, M. A. H., van Eunen, K., Ridder, M. D., Pabst, M., Daran, J. M. & Daran-Lapujade, P., 2022, In: Cell Reports. 39, 13, p. 111010 32 p., 111010.

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6 Citations (Scopus)

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Full-length single-molecule protein fingerprinting

Filius, M., van Wee, R. G., de Lannoy, C. V., Westerlaken, I., Li, Z., Kim, S. H., de Agrela Pinto, C., Wu, Y., Boons, G-J., Pabst, M., de Ridder, D. & Joo, C., 2024, In: Nature Nanotechnology. 12 p.

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Functional expression of a bacterial α-ketoglutarate dehydrogenase in the cytosol of Saccharomyces cerevisiae

Baldi, N., Dykstra, J. C., Luttik, M. A. H., Pabst, M., Wu, L., Benjamin, K. R., Vente, A., Pronk, J. T. & Mans, R., 2019, In: Metabolic Engineering. 56, p. 190-197

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5 Citations (Scopus)

102 Downloads (Pure)

Generation of glyco-engineered Nicotiana benthamiana for the production of monoclonal antibodies with a homogeneous human-like N-glycan structure

Strasser, R., Stadlmann, J., Schähs, M., Stiegler, G., Quendler, H., Mach, L., Glössl, J., Weterings, K., Pabst, M. & Steinkellner, H., 1 May 2008, In: Plant Biotechnology Journal. 6, 4, p. 392-402 11 p.

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431 Citations (Scopus)

Glycan profiles of the 27 N-glycosylation sites of the HIV envelope protein CN54gp140

Pabst, M., Chang, M., Stadlmann, J. & Altmann, F., 2012, In: Biological Chemistry. 393, 8, p. 719-730

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61 Citations (Scopus)

Glycerol conversion by Aerobic Granular Sludge

Elahinik, A., Haarsma, M. N., Abbas, B. A., Pabst, M., Xevgenos, D., van Loosdrecht, M. C. M. & Pronk, M., 2022, In: Water Research. 227, 12 p., 119340.

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Glycoproteomic characterization of butyrylcholinesterase from human plasma

Kolarich, D., Weber, A., Pabst, M., Stadlmann, J., Teschner, W., Ehrlich, H., Schwarz, H. P. & Altmann, F., 1 Jan 2008, In: Proteomics. 8, 2, p. 254-263 10 p.

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70 Citations (Scopus)

High-resolution droplet-based fractionation of nano-LC separations onto microarrays for MALDI-MS analysis

Küster, S. K., Pabst, M., Jefimovs, K., Zenobi, R. & Dittrich, P. S., 2014, In: Analytical Chemistry. 86, 10, p. 4848-4855 8 p.

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43 Citations (Scopus)

High-throughput nucleoside phosphate monitoring in mammalian cell fed-batch cultivation using quantitative matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Steinhoff, R. F., Ivarsson, M., Habicher, T., Villiger, T. K., Boertz, J., Krismer, J., Fagerer, S. R., Soos, M., Pabst, M. & More Authors, 2015, In: Biotechnology Journal. 10, 1, p. 190-198

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14 Citations (Scopus)

High-throughput profiling of nucleotides and nucleotide sugars to evaluate their impact on antibody N-glycosylation

Villiger, T. K., Steinhoff, R. F., Ivarsson, M., Solacroup, T., Stettler, M., Broly, H., Krismer, J., Pabst, M., Zenobi, R. & More Authors, 2016, In: Journal of Biotechnology. 229, p. 3-12

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