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  • A Comparison of Seed-and-Extend Techniques in Modern DNA Read Alignment Algorithms

    Ahmed, N., Bertels, K. & Al-Ars, Z., Dec 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Tian, T., Jiang, Q., Liu, Y., Burrage, K., Song, J., Wang, Y., Hu, X., Morishita, S., Zhu, Q. & Wang, G. (eds.). Piscataway, NJ: IEEE , p. 1421-1428 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

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    21 Citations (Scopus)
    725 Downloads (Pure)
  • An Efficient GPU-based de Bruijn Graph Construction Algorithm for Micro-Assembly

    Ren, S., Ahmed, N., Bertels, K. & Al-Ars, Z., 2018, Proceedings - 2018 IEEE 18th annual IEEE International Conference on BioInformatics and BioEngineering (BIBE 2018). Bourbakis, N. G. & Kavraki, D. (eds.). Piscataway, NJ, USA: IEEE , p. 67-72 6 p. 8567459

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    2 Citations (Scopus)
    138 Downloads (Pure)
  • ArrowSAM: In-Memory Genomics Data Processing Using Apache Arrow

    Ahmad, T., Ahmed, N., Peltenburg, J. & Al-Ars, Z., 2020, 2020 3rd International Conference on Computer Applications & Information Security (ICCAIS): Proceedings. IEEE , p. 1-6 6 p. 9096725

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    5 Citations (Scopus)
    218 Downloads (Pure)
  • Comparison of Cloud-to-Cloud Distance Calculation Methods: Is the Most Complex Always the Most Suitable?

    Diaz, V., van Oosterom, P., Meijers, B. M., Verbree, E., Ahmed, N. & van Lankveld, T., 2024, Recent Advances in 3D Geoinformation Science: Proceedings of the 18th 3D GeoInfo Conference. Kolbe, T. H., Donaubauer, A. & Beil, C. (eds.). Cham: Springer, p. 329-334 6 p. (Lecture Notes in Geoinformation and Cartography).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  • Diminished-1 Fermat Number Transform for Integer Convolutional Neural Networks

    Baozhou, Z., Ahmed, N., Peltenburg, J., Bertels, K. & Al-Ars, Z., 2019, 2019 IEEE 4th International Conference on Big Data Analytics (ICBDA). Guan, S-U., Zhang, K. & Cao, J. (eds.). Piscataway, NJ, USA: IEEE , p. 47-52 6 p. 8713250

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    2 Citations (Scopus)
  • Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads

    Ahmed, N., Bertels, K. & Al-Ars, Z., 2020, ICBBB 2020 : Proceedings of 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics. New York: Association for Computing Machinery (ACM), p. 28-34 7 p. (PervasiveHealth: Pervasive Computing Technologies for Healthcare).

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    1 Citation (Scopus)
    37 Downloads (Pure)
  • GPU Accelerated API for Alignment of Genomics Sequencing Data

    Ahmed, N., Mushtaq, H., Bertels, K. & Al-Ars, Z., Nov 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Hu, X., Shyu, C. R., Bromberg, Y., Gao, J., Gong, Y., Korkin, D., Yoo, I. & Zheng, J. H. (eds.). Danvers: IEEE , p. 510-515 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    7 Citations (Scopus)
  • Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm

    Ahmed, N., Sima, VM., Houtgast, E., Bertels, K. & Al-Ars, Z., 7 Jan 2016, Proceedings of the 2015 IEEE/ACM International Conference on Computer-Aided Design, ICCAD. Marculescu, D. & Lim, F. (eds.). Piscataway, NJ, USA: IEEE Society, p. 240-246 7 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    33 Citations (Scopus)
  • Predictive Genome Analysis Using Partial DNA Sequencing Data

    Ahmed, N., Bertels, K. & Al-Ars, Z., 2017, 2017 IEEE 17th International Conference on BioInformatics and BioEngineering (BIBE). Piscataway: IEEE , p. 119-124 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

  • SALoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs

    Park, S., Kim, H., Ahmad, T., Ahmed, N., Al-Ars, Z., Hofstee, P., Kim, Y. & Lee, J., 2022, Proceedings of the 2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS). O'Conner, L. (ed.). Piscataway: IEEE , p. 728-738 11 p. 9820739

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    Open Access
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    1 Citation (Scopus)
    11 Downloads (Pure)
  • Streaming Distributed DNA Sequence Alignment Using Apache Spark

    Mushtaq, H., Ahmed, N. & Al-Ars, Z., 2017, 2017 IEEE 17th International Conference on BioInformatics and BioEngineering (BIBE). Piscataway: IEEE , p. 188-193 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

    9 Citations (Scopus)