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Research Output

2020

Automated classification of significant prostate cancer on MRI: A systematic review on the performance of machine learning applications

Castillo, J. M. T., Arif, M., Niessen, W. J., Schoots, I. G. & Veenland, J. F., 2020, In : Cancers. 12, 6, 13 p., 1606.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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1 Citation (Scopus)
2 Downloads (Pure)

Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks

Dubost, F., Collery, B., Renaudier, A., Roc, A., Posocco, N., Niessen, W. & de Bruijne, M., 2020, Computational Methods and Clinical Applications for Spine Imaging - 6th International Workshop and Challenge, CSI 2019, Proceedings. Cai, Y., Wang, L., Audette, M., Zheng, G. & Li, S. (eds.). Springer Open, p. 88-94 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11963 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Automatic Collateral Scoring from 3D CTA Images

Su, J., Wolff, L., Van Es, A. C. G. M., Van Zwam, W., Majoie, C., Dippel, D. W. J., Van Der Lugt, A., Niessen, W. J. & Van Walsum, T., 2020, In : IEEE Transactions on Medical Imaging. 39, 6, p. 2190-2200 8960439.

Research output: Contribution to journalArticleScientificpeer-review

Cerebral blood flow and cognitive functioning in patients with disorders along the heart–brain axis: Cerebral blood flow and the heart–brain axis

Heart–Brain Connection consortium & More Authors, 2020, (Accepted/In press) In : Alzheimer's and Dementia: Translational Research and Clinical Interventions.

Research output: Contribution to journalArticleScientificpeer-review

ESMRMB Round Table report on “Can Europe Lead in Machine Learning of MRI-Data?”

Pizzini, F. B., Pesapane, F., Niessen, W., Geerts-Ossevoort, L. & Broeckx, N., 2020, In : Magnetic Resonance Materials in Physics, Biology and Medicine. 33, p. 217-219 3 p.

Research output: Contribution to journalEditorialScientific

3 Citations (Scopus)

Integrating artificial intelligence into the clinical practice of radiology: challenges and recommendations

Recht, M. P., Dewey, M., Dreyer, K., Langlotz, C., Niessen, W., Prainsack, B. & Smith, J. J., 2020, In : European Radiology. 30, 6, p. 3576-3584 9 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Multi-atlas image registration of clinical data with automated quality assessment using ventricle segmentation

Dubost, F., de Bruijne, M., Nardin, M., Dalca, A. V., Donahue, K. L., Giese, A. K., Etherton, M. R., Wu, O., Niessen, W. & More Authors, 2020, In : Medical Image Analysis. 63, 14 p., 101698.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging

Li, B., de Groot, M., Steketee, R. M. E., Meijboom, R., Smits, M., Vernooij, M. W., Ikram, M. A., Liu, J., Niessen, W. J. & More Authors, 2020, In : NeuroImage. 218, 13 p., 116993.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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7 Downloads (Pure)

Predicting Global Cognitive Decline in the General Population Using the Disease State Index

Cremers, L. G. M., Huizinga, W., Niessen, W. J., Krestin, G. P., Poot, D. H. J., Ikram, M. A., Lötjönen, J., Klein, S. & Vernooij, M. W., 2020, In : Frontiers in Aging Neuroscience. 11, 12 p., 379.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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24 Downloads (Pure)

Transformation optimization and image blending for 3D liver ultrasound series stitching

Sun, Y., Kekec, T., Moelker, A., Niessen, W. J. & Van Walsum, T., 2020, Proceedings of SPIE : Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, Vol. 11315. 8 p. 1131512

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Weakly supervised object detection with 2D and 3D regression neural networks

Dubost, F., Adams, H., Yilmaz, P., Bortsova, G., Tulder, G. V., Ikram, M. A., Niessen, W., Vernooij, M. W. & Bruijne, M. D., Oct 2020, In : Medical Image Analysis. 65, 101767.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Downloads (Pure)
2019

3D regression neural network for the quantification of enlarged perivascular spaces in brain MRI

Dubost, F., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Niessen, W., Vernooij, M., de Bruijne, M. & de Bruijne, M., 2019, In : Medical Image Analysis. 51, p. 89-100

Research output: Contribution to journalArticleScientificpeer-review

10 Citations (Scopus)

A genome-wide association study identifies genetic loci associated with specific lobar brain volumes

van der Lee, S. J., Knol, M. J., Chauhan, G., Satizabal, C. L., Smith, A. V., Hofer, E., Bis, J. C., van den Akker, E. B., Niessen, W. J. & More Authors, 2019, In : Communications Biology. 2, 1, p. 1-9 9 p., 285.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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3 Citations (Scopus)
40 Downloads (Pure)

A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes

Li, B., Niessen, W., Klein, S., de Groot, M., Arfan Ikram, M., Vernooij, M. & Bron, E. E., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D., Liu, T., Peters, T. M., Staib, L. H., Essert, C., Zhou, S., Yap, P-T. & Khan, A. (eds.). Springer, p. 645-653 (Lecture Notes in Computer Science ; vol. 11766).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network

van Wijnen, K. M. H., Dubost, F., Yilmaz, P., Ikram, M. A., Niessen, W., Adams, H., Vernooij, M. W. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D. (ed.). Springer, p. 234-242 (Lecture Notes in Computer Science; vol. 11767).

Research output: Chapter in Book/Conference proceedings/Edited volumeChapterScientificpeer-review

Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

Dubost, F., Dünnwald, M., Huff, D., Scheurmann, V., Schreiber, F., Vernooij, M. W., Niessen, W., Skalej, M., Schreiber, S. & More Authors, 2019, Proceedings of 2nd International Workshop on Context-Aware Surgical Theaters,OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging, MLCN 2019. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer, p. 103-111 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Clinical value of cerebrospinal fluid neurofilament light chain in semantic dementia

Meeter, L. H. H., Steketee, R. M. E., Salkovic, D., Vos, M. E., Grossman, M., McMillan, C. T., Niessen, W. J., Papma, J. M., De Jong, F. J. & More Authors, 2019, In : Journal of Neurology, Neurosurgery and Psychiatry. 90, 9, p. 997-1004 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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5 Citations (Scopus)
70 Downloads (Pure)

Cognitive functioning in patients with disorders along the heart-brain axis: the role of cerebral blood flow

Leeuwis, A. E., Hooghiemstra, A. M., Bron, E. E., Kuipers, S., Oudeman, E. A., Kalay, T., Brunner-La-Rocco, H-P. H. P., Kappelle, L. J., Niessen, W. & More Authors, 2019, p. 755.

Research output: Contribution to conferenceAbstractScientific

Detection of mild cognitive impairment in a community-dwelling population using quantitative, multiparametric MRI-based classification

Bouts, M. J. R. J., van der Grond, J., Vernooij, M. W., Koini, M., Schouten, T. M., de Vos, F., Feis, R. A., Lechner, A., Niessen, W. J. & More Authors, 2019, In : Human Brain Mapping. 40, 9, p. 2711-2722 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2 Citations (Scopus)
80 Downloads (Pure)

Disease progression timeline estimation for Alzheimer's disease using discriminative event based modeling

Venkatraghavan, V., Bron, E. E., Niessen, W. J. & Klein, S., 2019, In : NeuroImage. 186, p. 518-532

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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9 Citations (Scopus)
92 Downloads (Pure)

Enlarged perivascular spaces in brain MRI: Automated quantification in four regions

Dubost, F., Yilmaz, P., Adams, H., Bortsova, G., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, In : NeuroImage. 185, p. 534-544

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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14 Citations (Scopus)
101 Downloads (Pure)

Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer, Vol. 11492. p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

1 Citation (Scopus)

Full exploitation of high dimensionality in brain imaging: The JPND working group statement and findings

Adams, H. H. H., Roshchupkin, G. V., DeCarli, C., Franke, B., Grabe, H. J., Habes, M., Jahanshad, N., Medland, S. E., Niessen, W. & More Authors, 2019, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 11, p. 286-290 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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1 Citation (Scopus)
66 Downloads (Pure)

Genetic architecture of subcortical brain structures in 38,851 individuals

Satizabal, C. L., Adams, H. H. H., Arfan Ikram, M. & Niessen, W., 2019, In : Nature Genetics. 51, 11, p. 1624-1636

Research output: Contribution to journalArticleScientificpeer-review

Genetic Determinants of Cortical Structure (Thickness, Surface Area and Volumes) among Disease Free Adults in the CHARGE Consortium

Niessen, W., 2019, (Accepted/In press) In : bioRxiv.

Research output: Contribution to journalArticleScientific

Genetic variation underlying cognition and its relation with neurological outcomes and brain imaging

Knol, M. J., Heshmatollah, A., Cremers, L. G. M., Ikram, M. K., Uitterlinden, A. G., van Duijn, C. M., Niessen, W. J., Vernooij, M. W., Ikram, M. A. & Adams, H. H. H., 2019, In : Aging. 11, 5, p. 1440-1456

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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1 Citation (Scopus)
71 Downloads (Pure)

Gray Matter Age Prediction as a Biomarker for Risk of Dementia

Wang, J., Knol, M. J., Tiulpin, A., Dubost, F., de Bruijne, M., Vernooij, M. W., Adams, H. H. H., Ikram, M. A., Niessen, W. J. & Roshchupkin, G. V., 15 Oct 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21213-21218

Research output: Contribution to journalArticleScientificpeer-review

9 Citations (Scopus)

Groupwise multichannel image registration

Guyader, J. M., Huizinga, W., Fortunati, V., Poot, D. H. J., Veenland, J. F., Paulides, M. M., Niessen, W. J. & Klein, S., 2019, In : IEEE Journal of Biomedical and Health Informatics. 23, 3, p. 1171-1180 8373696.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

High-Dimensional Mapping of Cognition to the Brain Using Voxel-Based Morphometry and Subcortical Shape Analysis

Zonneveld, H. I., Roshchupkin, G. V., Adams, H. H. H., Gutman, B. A., Van Der Lugt, A., Niessen, W., Vernooij, M. W. & Ikram, M. A., 2019, In : Journal of Alzheimer's Disease. 71, 1, p. 141-152

Research output: Contribution to journalArticleScientificpeer-review

Hydranet: Data augmentation for regression neural networks

Dubost, F., Bortsova, G., Adams, H., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, p. 438-446 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Independent Multiple Factor Association Analysis for Multiblock Data in Imaging Genetics

Vilor-Tejedor, N., Ikram, M. A., Roshchupkin, G. V., Cáceres, A., Alemany, S., Vernooij, M. W., Niessen, W. J., van Duijn, C. M., Adams, H. H. & More Authors, 2019, In : NeuroInformatics. 17, 4, p. 583-592 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Multiple-correlation similarity for block-matching based fast CT to ultrasound registration in liver interventions

Banerjee, J., Sun, Y., Klink, C., Gahrmann, R., Niessen, W. J., Moelker, A. & van Walsum, T., 2019, In : Medical Image Analysis. 53, p. 132-141

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Mutation stratification of desmoid-type fibromatosis using a radiogenomics approach

Timbergen, M., Starmans, M. P. A., Vos, M., Padmos, G. A., Grünhagen, D. J., van Leenders, G. J. L. H., Verhoef, C., Niessen, W., Sleijfer, S. & More Authors, 2019, In : European Journal of Surgical Oncology. 44, 2, p. e16

Research output: Contribution to journalMeeting AbstractScientific

Normative brain volumetry derived from different reference populations: impact on single-subject diagnostic assessment in dementia

Vinke, E. J., Huizinga, W., Bergtholdt, M., Adams, H. H., Steketee, R. M. E., Papma, J. M., De Jong, F. J., Niessen, W. J., Ikram, M. A. & More Authors, 2019, In : Neurobiology of Aging. 84, p. 9-16

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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1 Citation (Scopus)
36 Downloads (Pure)

Orientation Prior and Consistent Model Selection Increase Sensitivity of Tract-Based Spatial Statistics in Crossing-Fiber Regions

Arkesteijn, J., Poot, D., Ikram, M. A., Niessen, W., van Vliet, L., Vernooij, M. W. & Vos, F., 2019, In : IEEE Transactions on Medical Imaging. 39, 2, p. 308-319

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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19 Downloads (Pure)

Patterns of functional connectivity in an aging population: The Rotterdam Study

Zonneveld, H. I., Pruim, R. HR., Bos, D., Vrooman, H. A., Muetzel, R. L., Hofman, A., Rombouts, S. ARB., van der Lugt, A., Niessen, W. J. & More Authors, 2019, In : NeuroImage. 189, p. 432-444

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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13 Citations (Scopus)
102 Downloads (Pure)

Predicting brain age as a biomarker for risk of dementia

Wang, J., Knol, M. J., Tiulpin, A., Dubost, F., de Bruijne, M., Vernooij, M. W., Adams, H. H. H., Ikram, M. A., Niessen, W. & Roshchupkin, G. V., 2019, In : Alzheimer Disease and Associated Disorders. 15, 7, p. P537-P538

Research output: Contribution to journalMeeting AbstractScientific

Predicting the 1p/19q Codeletion Status of Presumed Low-Grade Glioma with an Externally Validated Machine Learning Algorithm

van der Voort, S. R., Incekara, F., Wijnenga, M. M. J., Kapas, G., Gardeniers, M., Schouten, J. W., French, P. J., Niessen, W. J., Klein, S. & More Authors, 2019, In : Clinical cancer research : an official journal of the American Association for Cancer Research. 25, 24, p. 7455-7462

Research output: Contribution to journalArticleScientificpeer-review

5 Citations (Scopus)

Radiomics approach to distinguish between well differentiated liposarcomas and lipomas on MRI

Vos, M., Starmans, M. P. A., Timbergen, M. J. M., van der Voort, S. R., Padmos, G. A., Kessels, W., Niessen, W. J., van Leenders, G. J. L. H. & Verhoef, C., 2019, In : British Journal of Surgery. 106, 13, p. 1800-1809

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
18 Downloads (Pure)

Spatially regularized shape analysis of the hippocampus using P-spline based shape regression

Achterberg, H. C., de Rooi, J., Vernooij, M. W., Arfan Ikram, M., Niessen, W., Eilers, P. & de Bruijne, M., 2019, In : IEEE Journal of Biomedical and Health Informatics. 11 p.

Research output: Contribution to journalArticleScientificpeer-review

The value of hippocampal volume, shape, and texture for 11-year prediction of dementia: a population-based study

Achterberg, H. C., Sørensen, L., Wolters, F. J., Niessen, W. J., Vernooij, M. W., Ikram, M. A., Nielsen, M. & de Bruijne, M., 2019, In : Neurobiology of Aging. 81, p. 58-66

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2 Citations (Scopus)
47 Downloads (Pure)
2018

Added value of multiphase CTA imaging for thrombus perviousness assessment

Santos, E. M. M., D’Esterre, C. D., Treurniet, K. M., Niessen, W. J., Abou Najm, M., Goyal, M., Demchuk, A. M., Majoie, C. B. L. M., Menon, B. K. & Marquering, H. A., 2018, In : Neuroradiology: a journal devoted to neuroimaging and interventional neuroradiology. 60, 1, p. 71-79

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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6 Citations (Scopus)
29 Downloads (Pure)

Age-dependent association of thyroid function with brain morphology and microstructural organization: Evidence from brain imaging

Chaker, L., Cremers, L. G. M., Korevaar, T. I. M., De Groot, M., Dehghan, A., Franco, O. H., Niessen, W. J., Ikram, M. A., Peeters, R. P. & Vernooij, M. W., 1 Jan 2018, In : Neurobiology of Aging: age-related phenomena, neurodegeneration and neuropathology. 61, p. 44-51 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
6 Citations (Scopus)
27 Downloads (Pure)

Aortic stiffness and brain integrity in elderly patients with cognitive and functional complaints

Tap, L., van Opbroek, A., Niessen, W. J., Smits, M. & Mattace-Raso, F. U. S., 2018, In : CLINICAL INTERVENTIONS IN AGING. 13, p. 2161-2167

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Citations (Scopus)
11 Downloads (Pure)

A spatio-temporal reference model of the aging brain

huizinga, W., Poot, D., Vernooij, M. W., Roshchupkin, G. V., bron, E. E., Ikram, M. A., Rueckert, D., Niessen, W. & Klein, S., 2018, In : NeuroImage. 169, p. 11-22

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
14 Citations (Scopus)
5 Downloads (Pure)

Automatic normative quantification of brain tissue volume to support the diagnosis of dementia: A clinical evaluation of diagnostic accuracy

Vernooij, M. W., Jasperse, B., Steketee, R., Koek, M., Vrooman, H., Ikram, M. A., Papma, J., van der Lugt, A., Smits, M. & Niessen, W. J., 2018, In : NeuroImage: Clinical. 20, p. 374-379 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
4 Citations (Scopus)
24 Downloads (Pure)

Averaged stochastic optimization for medical image registration based on variance reduction

Sun, W., Poot, D. H. J., Yang, X., Niessen, W. J. & Klein, S., 1 Jan 2018, Biomedical Image Registration - 8th International Workshop, WBIR 2018, Proceedings. Klein, S., Sommer, S., Durrleman, S. & Staring, M. (eds.). Springer, Vol. 10883 LNCS. p. 69-79 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10883 LNCS).

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

1 Citation (Scopus)

Brain Volumes and Longitudinal Cognitive Change: A Population-based Study

Vibha, D., Tiemeier, H., Mirza, S. S., Adams, H. H., Niessen, W. J., Hofman, A., Prasad, K., van der Lugt, A., Vernooij, M. W. & Ikram, M. A., 2018, In : Alzheimer Disease and Associated Disorders. 32, 1, p. 43-49

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Cerebellar growth impairment characterizes school-aged children born preterm without perinatal brain lesions

Pieterman, K., White, T. J., Van Den Bosch, G. E., Niessen, W. J., Reiss, I. K. M., Tibboel, D., Hoebeek, F. E. & Dudink, J., 2018, In : American Journal of Neuroradiology. 39, 5, p. 956-962 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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2 Citations (Scopus)
15 Downloads (Pure)

Classification of malignant and benign liver tumors using a radiomics approach

Starmans, M. P. A., Miclea, R. L., Van Der Voort, S. R., Niessen, W. J., Thomeer, M. G. & Klein, S., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741D

Research output: Chapter in Book/Conference proceedings/Edited volumeConference contributionScientificpeer-review

Open Access
File
3 Citations (Scopus)
50 Downloads (Pure)