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W.J. Niessen

Dr.

 https://orcid.org/0000-0002-5822-1995
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  • 2017

    Gp-Unet: Lesion detection from weak labels with a 3D regression network

    Dubost, F., Bortsova, G., Adams, H. H., Ikram, M. A., Niessen, W. J., Vernooij, M. W. & de Bruijne, M., 2017, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Descoteaux, M. (ed.). Springer, Vol. 10435 LNCS. p. 214-221 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10435 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    44 Citations (Scopus)

  • Heritability of connectivity and disconnectivity of the brain in a population-based study

    Langen, C. D., Roshchupkin, G., Adams, H. H., De Groot, M., Vos, F., Vernooij, M. W., Ikram, M. A. & Niessen, W. J., 15 Jun 2017, Proceedings of IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 349-353 5 p. 7950535

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • Laplacian eigenmaps for multimodal groupwise image registration

    Polfliet, M., Klein, S., Niessen, W. J. & Vandemeulebroucke, J., 2017, Medical Imaging 2017: Image Processing. Styner, M. A. & Angelini, E. D. (eds.). Bellingham, WA, USA: SPIE, 7 p. 101331N. (Proceedings of SPIE; vol. 10133).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    2 Citations (Scopus)
    43 Downloads (Pure)

  • Longitudinal analysis of diffusion-weighted MRI with a ball-and-sticks model

    Arkesteijn, G. A. M., Poot, D. H. J., Niestijl, M., Vernooij, M. W., Niessen, W. J., Van Vliet, L. J. & Vos, F. M., 15 Jun 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 783-786 4 p. 7950635

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    62 Downloads (Pure)

  • The effect of non-contrast CT slice thickness on thrombus density and perviousness assessment

    Tolhuisen, M. L., Enthoven, J., Santos, E. M. M., Niessen, W. J., Beenen, L. F. M., Dippel, D. W. J., van der Lugt, A., van Zwam, W. H., Roos, Y. B. W. E. M., van Oostenbrugge, R. J. & More Authors, 2017, Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment - 5th International Workshop, CMMI 2017 2nd International Workshop, RAMBO 2017 and 1st International Workshop, SWITCH 2017 Held in Conjunction with MICCAI 2017, Proceedings. Cardoso, J., Arbel, T. & Gao, F. (eds.). Springer, Vol. 10555 LNCS. p. 168-175 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10555 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    5 Citations (Scopus)

  • The structural disconnectome: A pathology-sensitive extension of the structural connectome

    Langen, C. D., Vernooij, M. W., Cremers, L. G. M., Huizinga, W., De Groot, M., Ikram, M. A., White, T. & Niessen, W. J., 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE, p. 366-370 7950539

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    2 Citations (Scopus)
  • 2018

    Averaged stochastic optimization for medical image registration based on variance reduction

    Sun, W., Poot, D. H. J., Yang, X., Niessen, W. J. & Klein, S., 1 Jan 2018, Biomedical Image Registration - 8th International Workshop, WBIR 2018, Proceedings. Klein, S., Sommer, S., Durrleman, S. & Staring, M. (eds.). Springer, Vol. 10883 LNCS. p. 69-79 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10883 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    1 Citation (Scopus)

  • Classification of malignant and benign liver tumors using a radiomics approach

    Starmans, M. P. A., Miclea, R. L., Van Der Voort, S. R., Niessen, W. J., Thomeer, M. G. & Klein, S., 2018, Medical Imaging 2018: Image Processing. SPIE, Vol. 10574. 105741D

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

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    17 Citations (Scopus)
    183 Downloads (Pure)

  • End-to-end diagnosis and segmentation learning from cardiac magnetic resonance imaging

    Snaauw, G., Gong, D., Maicas, G., van den Hengel, A., Niessen, W., Verjans, J. & Carneiro, G., 2018, ISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging. IEEE, p. 802-805 4 p. 8759276

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    19 Citations (Scopus)

  • Reproducible white matter tract segmentation using 3D U-net on a large-scale DTI dataset

    Li, B., de Groot, M., Vernooij, M. W., Ikram, M. A., Niessen, W. J. & Bron, E. E., 2018, Machine Learning in Medical Imaging - 9th International Workshop, MLMI 2018, Held in Conjunction with MICCAI 2018, Proceedings. Shi, Y., Suk, H-I. & Liu, M. (eds.). Springer, Vol. 11046 LNCS. p. 205-213 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11046 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    8 Citations (Scopus)

  • Towards robust CT-ultrasound registration using deep learning methods

    Sun, Y., Moelker, A., Niessen, W. J. & van Walsum, T., 2018, Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops MLCN 2018, DLF 2018, and iMIMIC 2018, Held in Conjunction with MICCAI 2018, Proceedings. Springer, Vol. 11038 LNCS. p. 43-51 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11038 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    17 Citations (Scopus)
  • 2019

    A Hybrid Deep Learning Framework for Integrated Segmentation and Registration: Evaluation on Longitudinal White Matter Tract Changes

    Li, B., Niessen, W., Klein, S., de Groot, M., Arfan Ikram, M., Vernooij, M. & Bron, E. E., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 . Shen, D., Liu, T., Peters, T. M., Staib, L. H., Essert, C., Zhou, S., Yap, P-T. & Khan, A. (eds.). Springer, p. 645-653 (Lecture Notes in Computer Science ; vol. 11766).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites

    Dubost, F., Dünnwald, M., Huff, D., Scheurmann, V., Schreiber, F., Vernooij, M. W., Niessen, W., Skalej, M., Schreiber, S. & More Authors, 2019, OR 2.0 Context-Aware Operating Theaters and Machine Learning in Clinical Neuroimaging - 2nd International Workshop, OR 2.0 2019, and 2nd International Workshop, MLCN 2019, Held in Conjunction with MICCAI 2019, Proceedings. Zhou, L., Sarikaya, D., Kia, S. M., Speidel, S., Malpani, A., Hashimoto, D., Habes, M., Löfstedt, T., Ritter, K. & Wang, H. (eds.). Springer, Vol. 11796. p. 103-111 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11796 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia

    Venkatraghavan, V., Dubost, F., Bron, E. E., Niessen, W. J., de Bruijne, M. & Klein, S., 2019, Information Processing in Medical Imaging - 26th International Conference, IPMI 2019, Proceedings. Chung, A. C. S., Gee, J. C., Yushkevich, P. A. & Bao, S. (eds.). Springer, Vol. 11492. p. 169-180 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11492 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    4 Citations (Scopus)

  • Hydranet: Data augmentation for regression neural networks

    Dubost, F., Bortsova, G., Adams, H., Ikram, M. A., Niessen, W., Vernooij, M. & de Bruijne, M., 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 - 22nd International Conference, Proceedings. Shen, D., Yap, P-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Springer, Vol. 11767. p. 438-446 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11767 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    7 Citations (Scopus)
  • 2020

    Automated Estimation of the Spinal Curvature via Spine Centerline Extraction with Ensembles of Cascaded Neural Networks

    Dubost, F., Collery, B., Renaudier, A., Roc, A., Posocco, N., Niessen, W. & de Bruijne, M., 2020, Computational Methods and Clinical Applications for Spine Imaging - 6th International Workshop and Challenge, CSI 2019, Proceedings. Cai, Y., Wang, L., Audette, M., Zheng, G. & Li, S. (eds.). SpringerOpen, p. 88-94 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11963 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    6 Citations (Scopus)

  • Transformation optimization and image blending for 3D liver ultrasound series stitching

    Sun, Y., Kekec, T., Moelker, A., Niessen, W. J. & Van Walsum, T., 2020, Proceedings of SPIE : Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and Modeling. Fei, B. & Linte, C. A. (eds.). SPIE, Vol. 11315. 8 p. 1131512

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • 2021

    Learning unbiased group-wise registration (LUGR) and joint segmentation: Evaluation on longitudinal diffusion MRI

    Li, B., Niessen, W. J., Klein, S., Ikram, M. A., Vernooij, M. W. & Bron, E. E., 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, Vol. 11596. 115960L. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11596).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    3 Citations (Scopus)

  • Projection-Wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis

    Liu, X., Li, B., Bron, E. E., Niessen, W. J., Wolvius, E. B. & Roshchupkin, G. V., 2021, Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 - 24th International Conference, Proceedings. de Bruijne, M., Cattin, P. C., Cotin, S., Padoy, N., Speidel, S., Zheng, Y. & Essert, C. (eds.). Springer, p. 814-823 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12905 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    2 Citations (Scopus)
  • 2022

    Evaluation of Marker Tracking Using Mono and Stereo Vision in Microsoft HoloLens for Surgical Navigation

    Thabit, A., Niessen, W. J., Wolvius, E. B. & Van Walsum, T., 2022, Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling. Linte, C. A. & Siewerdsen, J. H. (eds.). SPIE, 10 p. 1203415. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12034).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    3 Citations (Scopus)
    470 Downloads (Pure)