Data Compression Versus Signal Fidelity Tradeoff in Wired-OR Analog-to-Digital Compressive Arrays for Neural Recording

Pumiao Yan, Arash Akhoundi, Nishal P. Shah, Pulkit Tandon, Dante G. Muratore, E. J. Chichilnisky, Boris Murmann

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)
38 Downloads (Pure)

Abstract

Future high-density and high channel count neural interfaces that enable simultaneous recording of tens of thousands of neurons will provide a gateway to study, restore and augment neural functions. However, building such technology within the bit-rate limit and power budget of a fully implantable device is challenging. The wired-OR compressive readout architecture addresses the data deluge challenge of a high channel count neural interface using lossy compression at the analog-to-digital interface. In this article, we assess the suitability of wired-OR for several steps that are important for neuroengineering, including spike detection, spike assignment and waveform estimation. For various wiring configurations of wired-OR and assumptions about the quality of the underlying signal, we characterize the trade-off between compression ratio and task-specific signal fidelity metrics. Using data from 18 large-scale microelectrode array recordings in macaque retina ex vivo, we find that for an event SNR of 7-10, wired-OR correctly detects and assigns at least 80% of the spikes with at least 50× compression. The wired-OR approach also robustly encodes action potential waveform information, enabling downstream processing such as cell-type classification. Finally, we show that by applying an LZ77-based lossless compressor (gzip) to the output of the wired-OR architecture, 1000× compression can be achieved over the baseline recordings.

Original languageEnglish
Pages (from-to) 754 - 767
Number of pages14
JournalIEEE transactions on biomedical circuits and systems
Volume17
Issue number4
DOIs
Publication statusPublished - 2023

Bibliographical note

Green Open Access added to TU Delft Institutional Repository ‘You share, we take care!’ – Taverne project https://www.openaccess.nl/en/you-share-we-take-care
Otherwise as indicated in the copyright section: the publisher is the copyright holder of this work and the author uses the Dutch legislation to make this work public.

Keywords

  • A/D conversion
  • Analog-to-digital compression
  • Arrays
  • brain-machine interfaces
  • compression algorithm
  • Computer architecture
  • Microprocessors
  • neural interfaces
  • Neurons
  • Recording
  • Retina
  • Voltage

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