Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal

KA Cohen; TEPMF Abeel; A Manson McGuire; CA Desjardins; V Munsamy; TP Shea; BJ Walker; N Bantubani; DV Almeida; L Alvarado; SB Chapman; NR Mvelase; EY Duffy; MG Fitzgerald; P Govender; S Gujja; S Hamilton; C Howarth; JD Larimer; K Maharaj; MD Pearson; ME Priest; Q Zeng; N Padayatchi; J Grosset; SK Young; J Wortman; KP Mlisana; MR O'Donnel; BW Birren; WR Bishai; AS Pym; AM Earl

doi:10.1371/journal.pmed.1001880

Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal

KA Cohen, TEPMF Abeel, A Manson McGuire, CA Desjardins, V Munsamy, TP Shea, BJ Walker, N Bantubani, DV Almeida, L Alvarado, SB Chapman, NR Mvelase, EY Duffy, MG Fitzgerald, P Govender, S Gujja, S Hamilton, C Howarth, JD Larimer, K MaharajMD Pearson, ME Priest, Q Zeng, N Padayatchi, J Grosset, SK Young, J Wortman, KP Mlisana, MR O'Donnel, BW Birren, WR Bishai, AS Pym, AM Earl

Pattern Recognition and Bioinformatics

Research output: Contribution to journal › Article › Scientific › peer-review

176 Citations (Scopus)

Original language	English
Pages (from-to)	1-22
Number of pages	22
Journal	PLoS Medicine (Print)
Volume	12
Issue number	9
DOIs	https://doi.org/10.1371/journal.pmed.1001880
Publication status	Published - 2015

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10.1371/journal.pmed.1001880

Cite this

Cohen, KA., Abeel, TEPMF., Manson McGuire, A., Desjardins, CA., Munsamy, V., Shea, TP., Walker, BJ., Bantubani, N., Almeida, DV., Alvarado, L., Chapman, SB., Mvelase, NR., Duffy, EY., Fitzgerald, MG., Govender, P., Gujja, S., Hamilton, S., Howarth, C., Larimer, JD., ... Earl, AM. (2015). Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal. PLoS Medicine (Print), 12(9), 1-22. https://doi.org/10.1371/journal.pmed.1001880

Cohen, KA ; Abeel, TEPMF ; Manson McGuire, A ; Desjardins, CA ; Munsamy, V ; Shea, TP ; Walker, BJ ; Bantubani, N ; Almeida, DV ; Alvarado, L ; Chapman, SB ; Mvelase, NR ; Duffy, EY ; Fitzgerald, MG ; Govender, P ; Gujja, S ; Hamilton, S ; Howarth, C ; Larimer, JD ; Maharaj, K ; Pearson, MD ; Priest, ME ; Zeng, Q ; Padayatchi, N ; Grosset, J ; Young, SK ; Wortman, J ; Mlisana, KP ; O'Donnel, MR ; Birren, BW ; Bishai, WR ; Pym, AS ; Earl, AM. / Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal. In: PLoS Medicine (Print). 2015 ; Vol. 12, No. 9. pp. 1-22.

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title = "Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal",

author = "KA Cohen and TEPMF Abeel and {Manson McGuire}, A and CA Desjardins and V Munsamy and TP Shea and BJ Walker and N Bantubani and DV Almeida and L Alvarado and SB Chapman and NR Mvelase and EY Duffy and MG Fitzgerald and P Govender and S Gujja and S Hamilton and C Howarth and JD Larimer and K Maharaj and MD Pearson and ME Priest and Q Zeng and N Padayatchi and J Grosset and SK Young and J Wortman and KP Mlisana and MR O'Donnel and BW Birren and WR Bishai and AS Pym and AM Earl",

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Cohen, KA, Abeel, TEPMF, Manson McGuire, A, Desjardins, CA, Munsamy, V, Shea, TP, Walker, BJ, Bantubani, N, Almeida, DV, Alvarado, L, Chapman, SB, Mvelase, NR, Duffy, EY, Fitzgerald, MG, Govender, P, Gujja, S, Hamilton, S, Howarth, C, Larimer, JD, Maharaj, K, Pearson, MD, Priest, ME, Zeng, Q, Padayatchi, N, Grosset, J, Young, SK, Wortman, J, Mlisana, KP, O'Donnel, MR, Birren, BW, Bishai, WR, Pym, AS & Earl, AM 2015, 'Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal', PLoS Medicine (Print), vol. 12, no. 9, pp. 1-22. https://doi.org/10.1371/journal.pmed.1001880

Evolution of extensively drug-resistant tuberculosis over four decades: Whole genome sequencing and dating analysis of mycobacterium tuberculosis isolates from KwaZulu-Natal. / Cohen, KA; Abeel, TEPMF; Manson McGuire, A; Desjardins, CA; Munsamy, V; Shea, TP; Walker, BJ; Bantubani, N; Almeida, DV; Alvarado, L; Chapman, SB; Mvelase, NR; Duffy, EY; Fitzgerald, MG; Govender, P; Gujja, S; Hamilton, S; Howarth, C; Larimer, JD; Maharaj, K; Pearson, MD; Priest, ME; Zeng, Q; Padayatchi, N; Grosset, J; Young, SK; Wortman, J; Mlisana, KP; O'Donnel, MR; Birren, BW; Bishai, WR; Pym, AS; Earl, AM.

In: PLoS Medicine (Print), Vol. 12, No. 9, 2015, p. 1-22.

Research output: Contribution to journal › Article › Scientific › peer-review

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AU - Cohen, KA

AU - Abeel, TEPMF

AU - Manson McGuire, A

AU - Desjardins, CA

AU - Munsamy, V

AU - Shea, TP

AU - Walker, BJ

AU - Bantubani, N

AU - Almeida, DV

AU - Alvarado, L

AU - Chapman, SB

AU - Mvelase, NR

AU - Duffy, EY

AU - Fitzgerald, MG

AU - Govender, P

AU - Gujja, S

AU - Hamilton, S

AU - Howarth, C

AU - Larimer, JD

AU - Maharaj, K

AU - Pearson, MD

AU - Priest, ME

AU - Zeng, Q

AU - Padayatchi, N

AU - Grosset, J

AU - Young, SK

AU - Wortman, J

AU - Mlisana, KP

AU - O'Donnel, MR

AU - Birren, BW

AU - Bishai, WR

AU - Pym, AS

AU - Earl, AM

PY - 2015

Y1 - 2015

U2 - 10.1371/journal.pmed.1001880

DO - 10.1371/journal.pmed.1001880

M3 - Article

VL - 12

SP - 1

EP - 22

JO - PLoS Medicine (Print)

JF - PLoS Medicine (Print)

SN - 1549-1277

IS - 9

ER -