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Z. Al-Ars

Dr.ir.

 https://orcid.org/0000-0001-7670-8572
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  • 2018

    Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM

    Houtgast, E., Sima, V., Bertels, K. & Al-Ars, Z., 2018, 2018 IEEE 18th International Conference on BioInformatics and BioEngineering (BIBE). Bourbakis, N. G. & Kavraki, D. (eds.). Piscataway, NJ. USA: IEEE, p. 243-246 4 p.

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    5 Citations (Scopus)

  • Cost Effective Adaptive Voltage Scaling Using Path Delay Fault Testing

    Zandrahimi, M., Debaud, P., Castillejo, A. & Al-Ars, Z., 2018, 2018 IEEE East-West Design and Test Symposium ( EWDTS). Danvers: IEEE, p. 1-6 6 p. 8524693

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • Evaluating Auto-adaptation Methods for Fine-grained Adaptable Processors

    Hoozemans, J., van Straten, J., Al-Ars, Z. & Wong, S., 2018, Architecture of Computing Systems : ARCS 2018; 31st International Conference on Architecture of Computing Systems. Berekovic, M., Buchty, R., Hamann, H., Koch, D. & Pionteck, T. (eds.). Cham: Springer, p. 255-268 14 p. (Lecture Notes in Computer Science, Also part of the Theoretical Computer Science and General Issues book sub series; vol. 10793).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    2 Citations (Scopus)

  • GPU-based stochastic-gradient optimization for non-rigid medical image registration in time-critical applications

    Bhosale, P., Staring, M., Al-Ars, Z. & Berendsen, F. F., 2018, Medical Imaging 2018: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). Bellingham, WA: SPIE, p. 1-8 105740R. (Proceedings of SPIE; vol. 10574).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    6 Citations (Scopus)
    78 Downloads (Pure)

  • Industrial Evaluation of Transition Fault Testing for Cost Effective Offline Adaptive Voltage Scaling

    Zandrahimi, M., Debaud, P., Castillejo, A. & Al-Ars, Z., 2018, Proceedings of the 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE): Proceedings. IEEE, p. 289-292 4 p.

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • Porting and Benchmarking of BWAKIT Pipeline on OpenPOWER Architecture

    Kathiresan, N., Al-Ali, R., Jithesh, P., Narayanasamy, G. & Al-Ars, Z., 2018, High Performance Computing : ISC High Performance 2018 International Workshops, Revised Selected Papers. Yokota, R., Weiland, M., Shalf, J. & Alam, S. (eds.). Cham: Springer, p. 402-410 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11203 ).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • 2019

    A Fine-Grained Parallel Snappy Decompressor for FPGAs Using a Relaxed Execution Model

    Fang, J., Chen, J., Lee, J., Al-Ars, Z. & Hofstee, P., 2019, 2019 IEEE 27th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM): Proceedings. IEEE, p. 335-335 1 p. 8735518

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    6 Citations (Scopus)

  • An Accelerator for Posit Arithmetic Targeting Posit Level 1 BLAS Routines and Pair-HMM

    van Dam, L., Peltenburg, J., Al-Ars, Z. & Hofstee, H. P., 2019, CoNGA'19 Proceedings of the Conference for Next Generation Arithmetic 2019. New York, NY: Association for Computing Machinery (ACM), p. 5:1--5:10 10 p. 5

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    3 Citations (Scopus)
    190 Downloads (Pure)

  • Diminished-1 Fermat Number Transform for Integer Convolutional Neural Networks

    Baozhou, Z., Ahmed, N., Peltenburg, J., Bertels, K. & Al-Ars, Z., 2019, 2019 IEEE 4th International Conference on Big Data Analytics (ICBDA). Guan, S-U., Zhang, K. & Cao, J. (eds.). Piscataway, NJ, USA: IEEE, p. 47-52 6 p. 8713250

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    2 Citations (Scopus)

  • Fletcher: A framework to efficiently integrate FPGA accelerators with apache arrow

    Peltenburg, J. W., Van Straten, J., Wijtemans, L., Van Leeuwen, L., Al-Ars, Z. & Hofstee, P., 1 Sept 2019, Proceedings - 29th International Conference on Field-Programmable Logic and Applications, FPL 2019. Sourdis, I., Bouganis, C-S., Alvarez, C., Toledo Diaz, L. A., Valero, P. & Martorell, X. (eds.). Institute of Electrical and Electronics Engineers (IEEE), p. 270-277 8 p. 8892145. (Proceedings - 29th International Conference on Field-Programmable Logic and Applications, FPL 2019).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    15 Citations (Scopus)
    228 Downloads (Pure)

  • Refine and recycle: A method to increase decompression parallelism

    Fang, J., Chen, J., Lee, J., Al-Ars, Z. & Hofstee, H. P., 2019, 2019 IEEE 30th International Conference on Application-specific Systems, Architectures and Processors (ASAP): Proceedings. IEEE, p. 272-280 9 p. 8825015. (2019 IEEE 30TH INTERNATIONAL CONFERENCE ON APPLICATION-SPECIFIC SYSTEMS, ARCHITECTURES AND PROCESSORS (ASAP 2019)).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    6 Citations (Scopus)

  • SparkJNI: A Toolchain for Hardware Accelerated Big Data Apache Spark

    Voicu, T. A. & Al-Ars, Z., 2019, 2019 4th IEEE International Conference on Big Data Analytics, ICBDA 2019. Guan, S-U., Zhang, K. & Cao, J. (eds.). Piscataway, NJ, USA: IEEE, p. 152-157 6 p. 8713201

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    4 Citations (Scopus)

  • Supporting Columnar In-memory Formats on FPGA: The Hardware Design of Fletcher for Apache Arrow

    Peltenburg, J., van Straten, J., Brobbel, M., Hofstee, H. P. & Al-Ars, Z., 2019, Applied Reconfigurable Computing: 15th International Symposium, ARC 2019, Proceedings. Hochberger, C., Koch, A., Diniz, P., Woods, R. & Nelson, B. (eds.). Cham: Springer, p. 32-47 16 p. (Lecture Notes in Computer Science; vol. 11444 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    13 Citations (Scopus)
    178 Downloads (Pure)

  • The FitOptiVis ECSEL Project: Highly Efficient Distributed Embedded Image/Video Processing in Cyber-Physical Systems

    Al-Ars, Z., Basten, T., Beer, A. D., Geilen, M., Goswami, D., Jaäskelaïnen, P., Kadlec, J., Alejandro, M. M., Palumbo, F. & More Authors, 30 Apr 2019, CF'19 : Proceedings of the 16th ACM International Conference on Computing Frontiers. NewYork,NY: Association for Computing Machinery (ACM), p. 333-338 6 p.

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    31 Citations (Scopus)
  • 2020

    ArrowSAM: In-Memory Genomics Data Processing Using Apache Arrow

    Ahmad, T., Ahmed, N., Peltenburg, J. & Al-Ars, Z., 2020, 2020 3rd International Conference on Computer Applications & Information Security (ICCAIS): Proceedings. IEEE, p. 1-6 6 p. 9096725

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    5 Citations (Scopus)
    234 Downloads (Pure)

  • Design and management of image processing pipelines within CPS: 2 years of experience from the FitOptiVis ECSEL Project

    Pomante, L., Palumbo, F., Rinaldi, C., Valente, G., Sau, C., Fanni, T., van der Linden, F., Basten, T., Geilen, M., Al-Ars, Z. & More Authors, 2020, 2020 23rd Euromicro Conference on Digital System Design (DSD). O'Conner, L. (ed.). Piscataway: IEEE, p. 378-385 8 p.

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    6 Citations (Scopus)

  • Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads

    Ahmed, N., Bertels, K. & Al-Ars, Z., 2020, ICBBB 2020 : Proceedings of 2020 10th International Conference on Bioscience, Biochemistry and Bioinformatics. New York: Association for Computing Machinery (ACM), p. 28-34 7 p. (PervasiveHealth: Pervasive Computing Technologies for Healthcare).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    1 Citation (Scopus)
    44 Downloads (Pure)

  • NASB: Neural Architecture Search for Binary Convolutional Neural Networks

    Zhu, B., Al-Ars, Z. & Hofstee, H. P., 2020, 2020 International Joint Conference on Neural Networks, IJCNN 2020 - Proceedings. Piscataway: IEEE, p. 1-8 8 p. 9207674. (Proceedings of the International Joint Conference on Neural Networks).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    17 Citations (Scopus)
    49 Downloads (Pure)

  • Parallelization of variable rate decompression through metadata

    Noordsij, L., Vlugt, S. V. D., Bamakhrama, M. A., Al-Ars, Z. & Lindstrom, P., 2020, Proceedings - 2020 28th Euromicro International Conference on Parallel, Distributed and Network-Based Processing, PDP 2020. Daneshtalab, M., Francesco, L. & Sjödin, M. (eds.). Institute of Electrical and Electronics Engineers (IEEE), p. 245-252 8 p. 9092414

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    5 Citations (Scopus)
    69 Downloads (Pure)

  • Stairway to Abstraction: An Iterative Algorithm for Whisker Detection in Video Frames

    Betting, J. H. L. F., Romano, V., Bosman, L. W. J., Al-Ars, Z., De Zeeuw, C. I. & Strydis, C., Feb 2020, 2020 IEEE 11th Latin American Symposium on Circuits and Systems, LASCAS 2020. Institute of Electrical and Electronics Engineers (IEEE), 9068992. (2020 IEEE 11th Latin American Symposium on Circuits and Systems, LASCAS 2020).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    1 Citation (Scopus)

  • Synthesis-Free, Flexible and Fast Hardware Library for Biophysically Plausible Neurosimulations

    Miedema, R., Smaragdos, G., Negrello, M., Al-Ars, Z., Möller, M. & Strydis, C., 2020, FPGA '20: The 2020 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, Seaside, CA, USA, February 23-25, 2020. Neuendorffer, S. & Shannon, L. (eds.). New York, NY, USA: ACM CI, p. 319 1 p. (FPGA '20).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • 2021

    An Attention Module for Convolutional Neural Networks

    Zhu, B., Hofstee, P., Lee, J. & Al-Ars, Z., 2021, Artificial Neural Networks and Machine Learning – ICANN 2021 - 30th International Conference on Artificial Neural Networks, Proceedings. Farkaš, I., Masulli, P., Otte, S. & Wermter, S. (eds.). Springer, Vol. 12891. p. 167-178 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12891 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    6 Citations (Scopus)
    109 Downloads (Pure)

  • Battling the CPU Bottleneck in Apache Parquet to Arrow Conversion Using FPGA

    Peltenburg, J., Van Leeuwen, L. T. J., Hoozemans, J., Fang, J., Al-Ars, Z. & Hofstee, H. P., 2021, 2020 International Conference on Field-Programmable Technology (ICFPT). Maui, Hawaii, USA: IEEE, p. 281-286 6 p. 9415570

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    4 Citations (Scopus)
    124 Downloads (Pure)

  • Energy Efficient Multistandard Decompressor ASIP

    Hoozemans, J., Tervo, K., Jaaskelainen, P. & Al-Ars, Z., 2021, ICCDE 2021 - 2021 7th International Conference on Computing and Data Engineering. Association for Computing Machinery (ACM), p. 14-19 6 p. (ACM International Conference Proceeding Series; vol. Part F 174233).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    1 Citation (Scopus)
    49 Downloads (Pure)

  • FPGA Acceleration of Zstd Compression Algorithm

    Chen, J., Daverveldt, M. & Al-Ars, Z., 2021, 2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). O'Conner, L. (ed.). Piscataway: IEEE, p. 188-191 4 p. 9460400

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    8 Citations (Scopus)
    1148 Downloads (Pure)

  • GPU Acceleration of 3D Agent-Based Biological Simulations

    Hesam, A., Breitwieser, L., Rademakers, F. & Al-Ars, Z., 2021, 2021 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2021 - In conjunction with IEEE IPDPS 2021. O'Conner, L. (ed.). Piscataway: IEEE, p. 210-217 8 p. 9460692. (2021 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2021 - In conjunction with IEEE IPDPS 2021).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    1 Citation (Scopus)

  • Tens of gigabytes per second JSON-to-Arrow conversion with FPGA accelerators

    Peltenburg, J., Hadnagy, Á., Brobbel, M., Morrow, R. & Al-Ars, Z., 2021, 2021 International Conference on Field-Programmable Technology (ICFPT): Proceedings. IEEE, p. 1-9 9 p. 9609833. (2021 International Conference on Field-Programmable Technology, ICFPT 2021).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    4 Citations (Scopus)
    487 Downloads (Pure)
  • 2022

    Benchmarking Apache Arrow Flight - A wire-speed protocol for data transfer, querying and microservices

    Ahmad, T., Al-Ars, Z. & Hofstee, H. P., 2022, Proceedings of the 4th Benchmarking in the Datacenter: Expanding to the Cloud 2022. New York: Association for Computing Machinery (ACM), 10 p. 1

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    1 Citation (Scopus)
    584 Downloads (Pure)

  • Communication-Efficient Cluster Scalable Genomics Data Processing Using Apache Arrow Flight

    Ahmad, T., Ma, C., Al-Ars, Z. & Hofstee, H. P., 2022, Proceedings of the 2022 21st International Symposium on Parallel and Distributed Computing (ISPDC). Gurrola, J. (ed.). Piscataway: IEEE, p. 138-146 9 p.

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    13 Downloads (Pure)

  • Memory-Disaggregated In-Memory Object Store Framework for Big Data Applications

    Abrahamse, R., Hadnagy, Á. & Al-Ars, Z., 2022, Proceedings of the 2022 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). O'Conner, L. (ed.). Piscataway: IEEE, p. 1228-1234 7 p. 9835332. (Proceedings - 2022 IEEE 36th International Parallel and Distributed Processing Symposium Workshops, IPDPSW 2022).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    7 Downloads (Pure)

  • SALoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs

    Park, S., Kim, H., Ahmad, T., Ahmed, N., Al-Ars, Z., Hofstee, P., Kim, Y. & Lee, J., 2022, Proceedings of the 2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS). O'Conner, L. (ed.). Piscataway: IEEE, p. 728-738 11 p. 9820739

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    1 Citation (Scopus)
    15 Downloads (Pure)

  • WhiskEras 2.0: Fast and Accurate Whisker Tracking in Rodents

    Arvanitis, P., Betting, J. H. L. F., Bosman, L. W. J., Al-Ars, Z. & Strydis, C., 2022, Embedded Computer Systems: Architectures, Modeling, and Simulation - 21st International Conference, SAMOS 2021, Proceedings. Orailoglu, A., Jung, M. & Reichenbach, M. (eds.). Springer, p. 210-225 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13227 LNCS).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    31 Downloads (Pure)
  • 2023

    Learning-enabled multi-modal motion prediction in urban environments

    Trentin, V., Ma, C., Villagra, J. & Al-Ars, Z., 2023, IV 2023 - IEEE Intelligent Vehicles Symposium, Proceedings. Institute of Electrical and Electronics Engineers (IEEE), (IEEE Intelligent Vehicles Symposium, Proceedings; vol. 2023-June).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    2 Citations (Scopus)
    3 Downloads (Pure)

  • NLICE: Synthetic Medical Record Generation for Effective Primary Healthcare Differential Diagnosis

    Al-Ars, Z., Agba, O., Guo, Z., Boerkamp, C., Jaber, Z. & Jaber, T., 2023, Proceedings of the 2023 IEEE 23rd International Conference on Bioinformatics and Bioengineering (BIBE). Ceballos, C. (ed.). Piscataway: IEEE, p. 397-402 6 p. (Proceedings - 2023 IEEE 23rd International Conference on Bioinformatics and Bioengineering, BIBE 2023).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

  • QKSA: Quantum Knowledge Seeking Agent

    Sarkar, A., Al-Ars, Z. & Bertels, K., 2023, Artificial General Intelligence - 15th International Conference, AGI 2022, Proceedings. Goertzel, B., Iklé, M., Potapov, A. & Ponomaryov, D. (eds.). Springer, p. 384-393 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13539 LNAI).

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review

    Open Access
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    1 Citation (Scopus)
    33 Downloads (Pure)

  • Tydi-Chisel: Collaborative and Interface-Driven Data-Streaming Accelerators

    Cromjongh, C., Tian, Y., Hofstee, P. & Al-Ars, Z., 2023, Proceedings of the 2023 IEEE Nordic Circuits and Systems Conference (NorCAS). IEEE, 7 p.

    Research output: Chapter in Book/Conference proceedings/Edited volume › Conference contribution › Scientific › peer-review